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Lj1g3v3025180.1

Overview

Field Value
Gene ID Lj1g3v3025180
Transcript ID Lj1g3v3025180.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor TFIID subunit 3-like isoform X1 [Cicer arietinum] gi|502126856|ref|XP_004499468.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12321:SF53
1 309 309 1.60E-144 –
PANTHER
PTHR12321
1 309 309 1.60E-144 –
SMART
SM00576
28 104 77 1.20E-30
IPR006565
Gene3D
G3DSA:1.10.20.10
28 105 78 5.70E-04
IPR009072
Pfam
PF07524
29 99 71 5.50E-23
IPR006565
SUPERFAMILY
SSF47113
38 99 62 6.70E-05
IPR009072
CDD
cd08049
164 214 51 3.78E-08
IPR019473
Pfam
PF10406
165 210 46 2.20E-06
IPR019473
MobiDBLite
mobidb-lite
180 205 26 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v3025180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3025180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.