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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3183500 |
| Transcript ID | Lj1g3v3183500.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: metal tolerance protein 5-like [Glycine max] gi|356568951|ref|XP_003552671.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 348 | 348 | 6.20E-262 | – | |
| Phobius | 1 | 105 | 105 | – | – | |
| PANTHER | 1 | 348 | 348 | 6.20E-262 | ||
| SUPERFAMILY | 103 | 303 | 201 | 5.49E-40 | – | |
| Gene3D | 105 | 301 | 197 | 8.40E-40 | ||
| Phobius | 106 | 125 | 20 | – | – | |
| TIGRFAM | 108 | 347 | 240 | 2.50E-24 | ||
| Pfam | 109 | 302 | 194 | 4.10E-31 | ||
| Phobius | 126 | 130 | 5 | – | – | |
| Phobius | 131 | 155 | 25 | – | – | |
| TMHMM | 132 | 154 | 23 | – | – | |
| Phobius | 156 | 175 | 20 | – | – | |
| TMHMM | 175 | 194 | 20 | – | – | |
| Phobius | 176 | 194 | 19 | – | – | |
| Phobius | 195 | 215 | 21 | – | – | |
| TMHMM | 216 | 238 | 23 | – | – | |
| Phobius | 216 | 239 | 24 | – | – | |
| Phobius | 240 | 250 | 11 | – | – | |
| TMHMM | 251 | 270 | 20 | – | – | |
| Phobius | 251 | 270 | 20 | – | – | |
| Phobius | 271 | 275 | 5 | – | – | |
| Phobius | 276 | 295 | 20 | – | – | |
| Phobius | 296 | 348 | 53 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v3183500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3183500.1, powered by CORGI.
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