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Lj1g3v3268860.1

Overview

Field	Value
Gene ID	Lj1g3v3268860
Transcript ID	Lj1g3v3268860.1
Lotus japonicus genome version	MG20 v3.0
Description	Homeodomain-like [Medicago truncatula] gi\|87240806\|gb\|ABD32664.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	131	131	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	143	164	22	–	–
Gene3D	G3DSA:1.10.10.60 View details on G3DSA:1.10.10.60 Search for proteins/transripts with this domain View external data on G3DSA:1.10.10.60	165	232	68	3.50E-04	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50090 View details on PS50090 Search for proteins/transripts with this domain View external data on PS50090	166	227	62	6.086	IPR017877 Show description in modal box View details on IPR017877 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11260:SF120 View details on PTHR11260:SF120 Search for proteins/transripts with this domain View external data on PTHR11260:SF120	178	284	107	2.20E-13	–
PANTHER	PTHR11260 View details on PTHR11260 Search for proteins/transripts with this domain View external data on PTHR11260	178	284	107	2.20E-13	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	287	322	36	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v3268860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3268860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.