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Lj1g3v3343950.1

Overview

Field Value
Gene ID Lj1g3v3343950
Transcript ID Lj1g3v3343950.1
Lotus japonicus genome version MG20 v3.0
Description SnRK2 calcium sensor [Medicago truncatula] gi|357467475|ref|XP_003604022.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34574
1 369 369 4.30E-248 –
PANTHER
PTHR34574:SF2
1 369 369 4.30E-248 –
ProSiteProfiles
PS50222
30 65 36 10.887
IPR002048
SMART
SM00054
34 62 29 2.1
IPR002048
Pfam
PF13499
37 104 68 3.60E-07
IPR002048
Gene3D
G3DSA:1.10.238.10
38 119 82 1.20E-13
IPR011992
SUPERFAMILY
SSF47473
38 121 84 3.62E-15
IPR011992
ProSitePatterns
PS00018
43 55 13 –
IPR018247
ProSiteProfiles
PS50222
76 111 36 5.42
IPR002048
SUPERFAMILY
SSF47473
251 341 91 3.62E-15
IPR011992
ProSiteProfiles
PS50222
252 287 36 7.679
IPR002048
Gene3D
G3DSA:1.10.238.10
253 330 78 1.20E-13
IPR011992
SMART
SM00054
256 284 29 35
IPR002048
ProSiteProfiles
PS50222
298 333 36 6.982
IPR002048
SMART
SM00054
302 330 29 14
IPR002048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj1g3v3343950.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3343950.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.