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Lj1g3v3560230.1

Overview

Field Value
Gene ID Lj1g3v3560230
Transcript ID Lj1g3v3560230.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description SMAD/FHA domain-containing protein [Arabidopsis thaliana] gi|15231425|ref|NP_187378.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21712:SF35
6 311 306 3.40E-137 –
PANTHER
PTHR21712
6 311 306 3.40E-137 –
SUPERFAMILY
SSF49879
17 117 101 8.03E-15
IPR008984
CDD
cd00060
18 114 97 1.23E-14 –
Gene3D
G3DSA:2.60.200.20
23 124 102 9.90E-11
IPR000253
SMART
SM00240
30 88 59 4.50E-05
IPR000253
ProSiteProfiles
PS50006
31 88 58 13.713
IPR000253
Pfam
PF00498
32 106 75 1.10E-09
IPR000253

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v3560230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3560230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.