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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000253
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We have found 53 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.010s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0062999.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502160849|ref|XP_004511928.1| chr0 21255660 21261996 -
5 domain predictions
1 GO term
Lj0g3v0077669.1
n.a. Spastin [Medicago truncatula] gi|357463629|ref|XP_003602096.1| chr0 29803110 29807382 -
3 domain predictions
1 GO term
Lj0g3v0077669.2
n.a. Spastin [Medicago truncatula] gi|357463629|ref|XP_003602096.1| chr0 29803110 29807382 -
3 domain predictions
1 GO term
Lj0g3v0203629.1
n.a. PREDICTED: FHA domain-containing protein DDL-like [Cicer arietinum] gi|502128663|ref|XP_004500039.1| chr0 100955915 100958290 -
3 domain predictions
1 GO term
Lj0g3v0251809.1
n.a. PREDICTED: probable serine/threonine-protein kinase DDB_G0280133-like isoform X1 [Cicer arietinum] gi|502134109|ref|XP_004502003.1| chr0 130592813 130595389 +
5 domain predictions
1 GO term
Lj1g3v0052630.1
n.a. kinase-associated protein phosphatase [Lotus japonicus] gi|169409938|gb|ACA57835.1| chr1 600045 606408 +
5 domain predictions
1 GO term
Lj1g3v0052640.1
n.a. kinase-associated protein phosphatase [Lotus japonicus] gi|169409938|gb|ACA57835.1| chr1 600249 606636 +
5 domain predictions
1 GO term
Lj1g3v2141110.1
n.a. Microspherule protein [Medicago truncatula] gi|357466877|ref|XP_003603723.1| chr1 25828673 25834097 +
5 domain predictions
1 GO term
Lj1g3v2582270.2
n.a. PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cicer arietinum] gi|502104777|ref|XP_004492647.1| chr1 29761325 29769841 -
5 domain predictions
1 GO term
Lj1g3v3560230.1
n.a. SMAD/FHA domain-containing protein [Arabidopsis thaliana] gi|15231425|ref|NP_187378.1| chr1 40944383 40950204 +
5 domain predictions
1 GO term
Lj1g3v3560230.2
n.a. SMAD/FHA domain-containing protein [Arabidopsis thaliana] gi|15231425|ref|NP_187378.1| chr1 40944383 40950204 +
5 domain predictions
1 GO term
Lj1g3v3597270.1
n.a. PREDICTED: tyrosyl-DNA phosphodiesterase 1-like isoform X1 [Cicer arietinum] gi|502103206|ref|XP_004492226.1| chr1 41425377 41431693 -
3 domain predictions
1 GO term
Lj2g3v0216900.1
n.a. Parallel spindle [Medicago truncatula] gi|357443427|ref|XP_003591991.1| chr2 3744430 3750683 +
5 domain predictions
1 GO term
Lj2g3v1874610.1
n.a. PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Cicer arietinum] gi|502152894|ref|XP_004509142.1| chr2 27923785 27930781 -
5 domain predictions
1 GO term
Lj2g3v2471460.2
n.a. PREDICTED: nibrin-like isoform X1 [Cicer arietinum] gi|502096467|ref|XP_004490746.1| chr2 34703067 34710264 -
4 domain predictions
1 GO term
Lj3g3v0323270.1
n.a. PREDICTED: VID27-like protein-like [Cicer arietinum] gi|502081351|ref|XP_004486840.1| chr3 2420413 2422223 -
2 domain predictions
1 GO term
Lj4g3v0484790.1
n.a. PREDICTED: FHA domain-containing protein At4g14490-like [Cicer arietinum] gi|502142768|ref|XP_004505100.1| chr4 7845003 7846675 +
5 domain predictions
1 GO term
Lj4g3v1000030.1
n.a. Microspherule protein [Medicago truncatula] gi|357518171|ref|XP_003629374.1| chr4 14508894 14513825 +
5 domain predictions
1 GO term
Lj4g3v1287420.2
n.a. Tyrosyl-DNA phosphodiesterase [Medicago truncatula] gi|357520291|ref|XP_003630434.1| chr4 19018818 19025821 -
4 domain predictions
1 GO term
Lj4g3v2573930.1
n.a. PREDICTED: FHA domain-containing protein At4g14490-like [Cicer arietinum] gi|502142768|ref|XP_004505100.1| chr4 34429828 34432076 -
5 domain predictions
1 GO term
Lj5g3v1631060.1
n.a. Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|357442557|ref|XP_003591556.1| chr5 23659059 23670380 -
2 domain predictions
1 GO term
Lj5g3v1631060.2
n.a. Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|357442557|ref|XP_003591556.1| chr5 23663096 23670380 -
2 domain predictions
1 GO term
Lj5g3v1642090.1
n.a. Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|357442557|ref|XP_003591556.1| chr5 23687805 23690603 -
2 domain predictions
1 GO term
Lj5g3v1642090.2
n.a. Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|357442557|ref|XP_003591556.1| chr5 23687805 23692486 -
2 domain predictions
1 GO term
Lj5g3v1853220.1
n.a. Parallel spindle [Medicago truncatula] gi|357443427|ref|XP_003591991.1| chr5 26462737 26467193 +
5 domain predictions
1 GO term
Lj6g3v0896500.1
n.a. FHA domain-containing protein DDL [Medicago truncatula] gi|357459335|ref|XP_003599948.1| chr6 8809675 8816290 -
5 domain predictions
1 GO term
Lj6g3v1707370.1
n.a. n.a. chr6 19326080 19331916 +
3 domain predictions
1 GO term
Lj6g3v1707380.1
n.a. PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Cicer arietinum] gi|502079804|ref|XP_004486373.1| chr6 19326415 19331955 -
5 domain predictions
1 GO term
LotjaGi1g1v0102800.1
n.a. Nijmegen breakage syndrome 1 protein; TAIR: AT3G02680.1 nijmegen breakage syndrome 1; Swiss-Prot: sp|Q0H8D7|NBS1_ARATH Nijmegen breakage syndrome 1 protein; TrEMBL-Plants: tr|G7K5Y3|G7K5Y3_MEDTR NBS1-like protein; Found in the gene: LotjaGi1g1v0102800 LjG1.1_chr1 15789507 15796850 +
4 domain predictions
1 GO term
LotjaGi1g1v0237900.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56661786 56682964 +
3 domain predictions
1 GO term
LotjaGi1g1v0237900.2
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|K7KL59|K7KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0237900 LjG1.1_chr1 56662069 56681815 +
3 domain predictions
1 GO term
LotjaGi1g1v0424900.1
n.a. Forkhead-associated (FHA) domain protein; TAIR: AT3G54350.1 Forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1; TrEMBL-Plants: tr|K7KHS6|K7KHS6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0424900 LjG1.1_chr1 91958049 91963542 +
5 domain predictions
1 GO term
LotjaGi1g1v0428400_LC.1
n.a. Protein phosphatase 2A regulatory B subunit family protein; TAIR: AT4G15890.1 binding protein; Swiss-Prot: sp|P17058|CRTC_RHOCB Acyclic carotenoid 1,2-hydratase; TrEMBL-Plants: tr|A0A150GIZ1|A0A150GIZ1_GONPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0428400_LC LjG1.1_chr1 92340415 92341087 -
2 domain predictions
1 GO term
LotjaGi1g1v0463800.1
n.a. Smad/FHA domain protein; TAIR: AT2G45460.4 SMAD/FHA domain-containing protein; Swiss-Prot: sp|A5WW08|CHFR_DANRE E3 ubiquitin-protein ligase CHFR; TrEMBL-Plants: tr|A0A0R0FDP0|A0A0R0FDP0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0463800 LjG1.1_chr1 96925380 96933959 -
5 domain predictions
1 GO term
LotjaGi1g1v0521600.1
n.a. SMAD/FHA domain-containing protein; TAIR: AT5G38840.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|Q9BWU0|NADAP_HUMAN Kanadaptin; TrEMBL-Plants: tr|K7L8U3|K7L8U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0521600 LjG1.1_chr1 104586955 104606805 -
5 domain predictions
1 GO term
LotjaGi1g1v0590700.1
n.a. Fork head transcription factor 1; TAIR: AT3G07220.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|Q9SFV2|FHA2_ARATH FHA domain-containing protein FHA2; TrEMBL-Plants: tr|A0A0S3RUM9|A0A0S3RUM9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0590700 LjG1.1_chr1 113064991 113071222 +
5 domain predictions
1 GO term
LotjaGi1g1v0596400.1
n.a. Tyrosyl-DNA phosphodiesterase 1; TAIR: AT5G15170.1 tyrosyl-DNA phosphodiesterase-like protein; Swiss-Prot: sp|Q8H1D9|TYDP1_ARATH Tyrosyl-DNA phosphodiesterase 1; TrEMBL-Plants: tr|G7KVX8|G7KVX8_MEDTR Tyrosyl-DNA phosphodiesterase; Found in the gene: LotjaGi1g1v0596400 LjG1.1_chr1 113580977 113589145 -
2 domain predictions
1 GO term
LotjaGi1g1v0596400.2
n.a. Tyrosyl-DNA phosphodiesterase 1; TAIR: AT5G15170.1 tyrosyl-DNA phosphodiesterase-like protein; Swiss-Prot: sp|Q8H1D9|TYDP1_ARATH Tyrosyl-DNA phosphodiesterase 1; TrEMBL-Plants: tr|G7KVX8|G7KVX8_MEDTR Tyrosyl-DNA phosphodiesterase; Found in the gene: LotjaGi1g1v0596400 LjG1.1_chr1 113581180 113589058 -
2 domain predictions
1 GO term
LotjaGi2g1v0098000_LC.1
n.a. Nuclear inhibitor of protein phosphatase 1; TAIR: AT1G34355.1 forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|B7SY83|PS1_ARATH FHA domain-containing protein PS1; TrEMBL-Plants: tr|I1MNY3|I1MNY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0098000_LC LjG1.1_chr2 32074406 32080528 +
5 domain predictions
1 GO term
LotjaGi2g1v0401800.1
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1LHE5|I1LHE5_SOYBN Zeaxanthin epoxidase, chloroplastic; Found in the gene: LotjaGi2g1v0401800 LjG1.1_chr2 89908692 89915572 -
5 domain predictions
1 GO term
LotjaGi2g1v0457200.1
n.a. Protein phosphatase 2C; TAIR: AT5G19280.1 kinase associated protein phosphatase; Swiss-Prot: sp|P46014|P2C70_ARATH Protein phosphatase 2C 70; TrEMBL-Plants: tr|B4Y5J8|B4Y5J8_LOTJA Kinase-associated protein phosphatase; Found in the gene: LotjaGi2g1v0457200 LjG1.1_chr2 95068793 95076365 -
5 domain predictions
1 GO term
LotjaGi2g1v0457200.2
n.a. Protein phosphatase 2c, putative; TAIR: AT5G19280.1 kinase associated protein phosphatase; Swiss-Prot: sp|P46014|P2C70_ARATH Protein phosphatase 2C 70; TrEMBL-Plants: tr|B4Y5J8|B4Y5J8_LOTJA Kinase-associated protein phosphatase; Found in the gene: LotjaGi2g1v0457200 LjG1.1_chr2 95069914 95075908 -
3 domain predictions
1 GO term
LotjaGi4g1v0105000.1
n.a. Zeaxanthin epoxidase, chloroplastic; TAIR: AT5G67030.1 zeaxanthin epoxidase (ZEP) (ABA1); Swiss-Prot: sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic; TrEMBL-Plants: tr|I1MVX7|I1MVX7_SOYBN Zeaxanthin epoxidase, chloroplastic; Found in the gene: LotjaGi4g1v0105000 LjG1.1_chr4 14613799 14621834 +
5 domain predictions
1 GO term
LotjaGi4g1v0124300.1
n.a. Forkhead-associated (FHA) domain protein; TAIR: AT3G54350.1 Forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|Q96EZ8|MCRS1_HUMAN Microspherule protein 1; TrEMBL-Plants: tr|V7CD65|V7CD65_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0124300 LjG1.1_chr4 18006888 18012962 +
5 domain predictions
1 GO term
LotjaGi4g1v0368000.1
n.a. FHA domain-containing protein; TAIR: AT4G14490.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|O23305|Y4449_ARATH FHA domain-containing protein At4g14490; TrEMBL-Plants: tr|G7LJA2|G7LJA2_MEDTR FHA domain plant protein; Found in the gene: LotjaGi4g1v0368000 LjG1.1_chr4 74779428 74783554 -
5 domain predictions
1 GO term
LotjaGi4g1v0416500.1
n.a. Tyrosyl-DNA phosphodiesterase 1; TAIR: AT5G07400.1 forkhead-associated domain-containing protein / FHA domain-containing protein; Swiss-Prot: sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1; TrEMBL-Plants: tr|G7LGI2|G7LGI2_MEDTR Tyrosyl-DNA phosphodiesterase; Found in the gene: LotjaGi4g1v0416500 LjG1.1_chr4 79212458 79219717 -
5 domain predictions
1 GO term
LotjaGi5g1v0251600.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q60QD1|FIGL1_CAEBR Fidgetin-like protein 1; TrEMBL-Plants: tr|K7K8K0|K7K8K0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251600 LjG1.1_chr5 55993936 56005432 -
2 domain predictions
1 GO term
LotjaGi5g1v0251700.1
n.a. ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT4G02480.1 AAA-type ATPase family protein; Swiss-Prot: sp|F6QV99|ATAD1_BOVIN ATPase family AAA domain-containing protein 1; TrEMBL-Plants: tr|A0A0L9VI79|A0A0L9VI79_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251700 LjG1.1_chr5 56007622 56024443 -
2 domain predictions
1 GO term
LotjaGi5g1v0278700_LC.1
n.a. Nuclear inhibitor of protein phosphatase 1; TAIR: AT1G34355.1 forkhead-associated (FHA) domain-containing protein; Swiss-Prot: sp|B7SY83|PS1_ARATH FHA domain-containing protein PS1; TrEMBL-Plants: tr|V7BCX1|V7BCX1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0278700_LC LjG1.1_chr5 59406287 59410904 +
5 domain predictions
1 GO term
LotjaGi6g1v0162900.1
n.a. Smad/FHA domain protein; TAIR: AT3G20550.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL; TrEMBL-Plants: tr|V7BKB1|V7BKB1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0162900 LjG1.1_chr6 44656125 44662977 -
5 domain predictions
1 GO term