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Lj1g3v3608350.2

Overview

Field Value
Gene ID Lj1g3v3608350
Transcript ID Lj1g3v3608350.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable calcium-binding protein CML22-like [Glycine max] gi|356524445|ref|XP_003530839.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 25 118 94 2.30E-37
PANTHER 25 118 94 2.30E-37
SUPERFAMILY 46 208 163 1.52E-29
Gene3D 53 210 158 5.40E-29
ProSiteProfiles 53 88 36 12.477
SMART 57 85 29 0.019
Pfam 57 116 60 1.30E-08
CDD 58 118 61 1.70E-12
ProSitePatterns 66 78 13
ProSiteProfiles 89 124 36 9.269
SMART 93 121 29 3.6
PANTHER 139 212 74 2.30E-37
PANTHER 139 212 74 2.30E-37
ProSiteProfiles 143 178 36 9.353
Pfam 146 207 62 1.30E-07
SMART 147 175 29 0.34
CDD 150 210 61 5.22E-07
ProSitePatterns 156 168 13
ProSiteProfiles 181 212 32 6.312

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj1g3v3608350.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3608350.2, powered by CORGI.

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