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Lj1g3v3690290.1

Overview

Field Value
Gene ID Lj1g3v3690290
Transcript ID Lj1g3v3690290.1
Lotus japonicus genome version MG20 v3.0
Description B3 domain-containing protein [Medicago truncatula] gi|357504755|ref|XP_003622666.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31920:SF16
17 317 301 2.90E-65 –
PANTHER
PTHR31920
17 317 301 2.90E-65 –
Gene3D
G3DSA:2.40.330.10
17 113 97 2.50E-25
IPR015300
SUPERFAMILY
SSF101936
18 120 103 8.44E-24
IPR015300
ProSiteProfiles
PS50863
20 113 94 14.931
IPR003340
CDD
cd10017
20 111 92 1.71E-19
IPR003340
Pfam
PF02362
21 111 91 1.40E-17
IPR003340
SMART
SM01019
21 113 93 3.30E-18
IPR003340
MobiDBLite
mobidb-lite
127 148 22 – –
Gene3D
G3DSA:2.40.330.10
211 319 109 5.50E-23
IPR015300
SUPERFAMILY
SSF101936
212 319 108 1.41E-22
IPR015300
CDD
cd10017
217 317 101 1.07E-22
IPR003340
SMART
SM01019
218 319 102 1.70E-16
IPR003340
Pfam
PF02362
218 318 101 2.40E-19
IPR003340
ProSiteProfiles
PS50863
232 319 88 11.843
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj1g3v3690290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3690290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.