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Lj1g3v3766050.1

Overview

Field Value
Gene ID Lj1g3v3766050
Transcript ID Lj1g3v3766050.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ankyrin-1-like [Glycine max] gi|356560523|ref|XP_003548541.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24198
1 72 72 3.00E-221 –
PANTHER
PTHR24198:SF77
1 72 72 3.00E-221 –
SMART
SM00248
18 47 30 41
IPR002110
Gene3D
G3DSA:1.25.40.20
21 45 25 2.10E-40
IPR020683
SUPERFAMILY
SSF48403
22 49 28 2.05E-36
IPR020683
SUPERFAMILY
SSF48403
96 144 49 2.05E-36
IPR020683
Gene3D
G3DSA:1.25.40.20
99 398 300 2.10E-40
IPR020683
SMART
SM00248
106 135 30 2200
IPR002110
PANTHER
PTHR24198:SF77
113 169 57 3.00E-221 –
PANTHER
PTHR24198
113 169 57 3.00E-221 –
SMART
SM00248
140 170 31 870
IPR002110
PANTHER
PTHR24198:SF77
187 612 426 3.00E-221 –
PANTHER
PTHR24198
187 612 426 3.00E-221 –
SMART
SM00248
191 220 30 410
IPR002110
SUPERFAMILY
SSF48403
196 397 202 2.05E-36
IPR020683
ProSiteProfiles
PS50297
196 398 203 26.39
IPR020683
CDD
cd00204
197 301 105 6.65E-25 –
SMART
SM00248
225 254 30 0.17
IPR002110
ProSiteProfiles
PS50088
225 257 33 9.137
IPR002110
Pfam
PF13637
227 279 53 3.70E-09 –
CDD
cd00204
253 396 144 4.35E-20 –
ProSiteProfiles
PS50088
258 280 23 9.19
IPR002110
SMART
SM00248
258 288 31 0.16
IPR002110
SMART
SM00248
292 332 41 1500
IPR002110
Pfam
PF13637
295 361 67 9.40E-05 –
SMART
SM00248
340 371 32 0.71
IPR002110
MobiDBLite
mobidb-lite
464 483 20 – –
MobiDBLite
mobidb-lite
570 599 30 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj1g3v3766050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3766050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.