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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002110
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 302 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 7.680s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001959.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Cicer arietinum] gi|502134553|ref|XP_004502161.1| chr0 596128 600991 -
2 domain predictions
1 GO term
Lj0g3v0006359.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|358347224|ref|XP_003637659.1| chr0 2431129 2435672 -
3 domain predictions
1 GO term
Lj0g3v0049599.1
n.a. hermes [Medicago truncatula] gi|261824308|gb|ACX94227.1| chr0 16854692 16857856 +
3 domain predictions
1 GO term
Lj0g3v0060929.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|358347224|ref|XP_003637659.1| chr0 20353838 20358381 +
3 domain predictions
1 GO term
Lj0g3v0064839.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 66-like [Glycine max] gi|356541737|ref|XP_003539330.1| chr0 22481227 22483499 -
3 domain predictions
1 GO term
Lj0g3v0067589.1
n.a. PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like isoform X1 [Cicer arietinum] gi|502086635|ref|XP_004488278.1| chr0 24022976 24033487 -
4 domain predictions
1 GO term
Lj0g3v0067589.2
n.a. PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like isoform X1 [Cicer arietinum] gi|502086635|ref|XP_004488278.1| chr0 24022976 24033487 -
4 domain predictions
1 GO term
Lj0g3v0089729.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Cucumis sativus] gi|449490185|ref|XP_004158531.1| chr0 36877865 36878349 +
2 domain predictions
1 GO term
Lj0g3v0101779.1
n.a. PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Glycine max] gi|356496593|ref|XP_003517151.1| chr0 43220730 43224038 -
3 domain predictions
1 GO term
Lj0g3v0115939.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr0 50955835 50957836 +
2 domain predictions
1 GO term
Lj0g3v0123289.2
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225425076|ref|XP_002271486.1| chr0 55275235 55279595 +
2 domain predictions
1 GO term
Lj0g3v0201559.1
n.a. PREDICTED: E3 ubiquitin-protein ligase KEG-like [Glycine max] gi|356539563|ref|XP_003538267.1| chr0 99665394 99673549 -
4 domain predictions
1 GO term
Lj0g3v0201559.2
n.a. PREDICTED: E3 ubiquitin-protein ligase KEG-like [Glycine max] gi|356539563|ref|XP_003538267.1| chr0 99665394 99673549 -
4 domain predictions
1 GO term
Lj0g3v0206139.1
n.a. XB3 in [Theobroma cacao] gi|508786803|gb|EOY34059.1| chr0 102664201 102668273 -
3 domain predictions
1 GO term
Lj0g3v0206139.2
n.a. XB3 in [Theobroma cacao] gi|508786803|gb|EOY34059.1| chr0 102664201 102668273 -
4 domain predictions
1 GO term
Lj0g3v0206139.3
n.a. XB3 in [Theobroma cacao] gi|508786803|gb|EOY34059.1| chr0 102666491 102667336 -
3 domain predictions
1 GO term
Lj0g3v0209959.1
n.a. Nuclear factor NF-kappa-B p105 subunit [Medicago truncatula] gi|357493197|ref|XP_003616887.1| chr0 105432740 105437817 +
3 domain predictions
1 GO term
Lj0g3v0217539.1
n.a. PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase KEG-like [Cicer arietinum] gi|502124821|ref|XP_004498687.1| chr0 110739047 110742288 -
4 domain predictions
1 GO term
Lj0g3v0236929.1
n.a. PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max] gi|356559851|ref|XP_003548210.1| chr0 122797373 122804327 +
5 domain predictions
1 GO term
Lj0g3v0249959.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cicer arietinum] gi|502082023|ref|XP_004487042.1| chr0 129588382 129592623 -
3 domain predictions
1 GO term
Lj0g3v0319279.1
n.a. PREDICTED: ankyrin repeat domain-containing protein 2-like [Cicer arietinum] gi|502127365|ref|XP_004499676.1| chr0 166683816 166688873 -
3 domain predictions
1 GO term
Lj0g3v0335499.1
n.a. PREDICTED: LOW QUALITY PROTEIN: regulatory protein NPR1-like [Glycine max] gi|356532734|ref|XP_003534926.1| chr0 175726824 175728735 +
2 domain predictions
1 GO term
Lj0g3v0342399.1
n.a. PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] gi|225446327|ref|XP_002273773.1| chr0 179502567 179510410 -
3 domain predictions
1 GO term
Lj0g3v0347009.1
n.a. PREDICTED: protein TANC1-like [Cicer arietinum] gi|502166647|ref|XP_004513946.1| chr0 182044309 182047467 -
4 domain predictions
1 GO term
Lj1g3v0131220.1
n.a. PREDICTED: death-associated protein kinase 1-like [Glycine max] gi|356545491|ref|XP_003541175.1| chr1 1753440 1756028 +
3 domain predictions
1 GO term
Lj1g3v0998730.1
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 2-like [Glycine max] gi|356509224|ref|XP_003523351.1| chr1 12659912 12665557 +
4 domain predictions
1 GO term
Lj1g3v1442930.2
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD1-like [Cicer arietinum] gi|502133396|ref|XP_004501749.1| chr1 17388737 17392679 +
3 domain predictions
1 GO term
Lj1g3v1720140.1
n.a. Arginine N-methyltransferase [Medicago truncatula] gi|358345484|ref|XP_003636807.1| chr1 20236206 20238494 +
3 domain predictions
1 GO term
Lj1g3v1720140.2
n.a. PREDICTED: arginine N-methyltransferase 2 [Glycine max] gi|356514465|ref|XP_003525926.1| chr1 20236206 20238494 +
3 domain predictions
1 GO term
Lj1g3v1798860.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357465949|ref|XP_003603259.1| chr1 21790525 21792827 -
3 domain predictions
1 GO term
Lj1g3v1913910.1
n.a. PREDICTED: potassium channel AKT1-like [Glycine max] gi|356515474|ref|XP_003526425.1| chr1 22755657 22772854 -
3 domain predictions
1 GO term
Lj1g3v2404330.1
n.a. PREDICTED: dual specificity protein kinase pyk1-like [Glycine max] gi|356497930|ref|XP_003517809.1| chr1 28252845 28256855 -
3 domain predictions
1 GO term
Lj1g3v2404330.2
n.a. PREDICTED: dual specificity protein kinase pyk1-like [Glycine max] gi|356497930|ref|XP_003517809.1| chr1 28255545 28256855 -
3 domain predictions
1 GO term
Lj1g3v2582280.1
n.a. PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1-like [Glycine max] gi|356566840|ref|XP_003551634.1| chr1 29774361 29781008 -
2 domain predictions
1 GO term
Lj1g3v3137870.1
n.a. PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD3-like [Glycine max] gi|356523716|ref|XP_003530481.1| chr1 35745154 35754140 +
3 domain predictions
1 GO term
Lj1g3v3766050.1
n.a. PREDICTED: ankyrin-1-like [Glycine max] gi|356560523|ref|XP_003548541.1| chr1 43178071 43182068 +
3 domain predictions
1 GO term
Lj1g3v3834090.1
n.a. PREDICTED: ankyrin repeat domain-containing protein 50-like [Glycine max] gi|356560509|ref|XP_003548534.1| chr1 43555483 43561377 -
3 domain predictions
1 GO term
Lj1g3v3975580.1
n.a. Ankyrin repeat domain-containing protein [Medicago truncatula] gi|357508731|ref|XP_003624654.1| chr1 46892907 46902500 -
3 domain predictions
1 GO term
Lj1g3v3975850.1
n.a. PREDICTED: ankyrin repeat and protein kinase domain-containing protein 1-like [Fragaria vesca subsp]. vesca] gi|470103946|ref|XP_004288386.1| chr1 47057981 47060560 -
4 domain predictions
1 GO term
Lj1g3v4154950.1
n.a. BTB/POZ ankyrin repeat protein [Lotus japonicus] gi|343794556|gb|AEM62768.1| chr1 49310131 49313542 -
3 domain predictions
1 GO term
Lj1g3v4155980.1
n.a. BTB/POZ ankyrin repeat protein [Lotus japonicus] gi|343794556|gb|AEM62768.1| chr1 49400388 49403799 +
3 domain predictions
1 GO term
Lj1g3v4275530.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum] gi|502108910|ref|XP_004493518.1| chr1 50324538 50328163 +
3 domain predictions
1 GO term
Lj1g3v4548980.1
n.a. PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max] gi|356545932|ref|XP_003541387.1| chr1 53635893 53638783 +
3 domain predictions
1 GO term
Lj1g3v4549000.1
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53640001 53641047 +
3 domain predictions
1 GO term
Lj1g3v4549010.2
n.a. PREDICTED: transcription factor PIF1-like isoform X1 [Cicer arietinum] gi|502110344|ref|XP_004493858.1| chr1 53640187 53643109 +
4 domain predictions
1 GO term
Lj1g3v4578470.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357510531|ref|XP_003625554.1| chr1 54153241 54156557 +
3 domain predictions
1 GO term
Lj1g3v4578490.1
n.a. Ankyrin repeat-containing protein [Medicago truncatula] gi|357510525|ref|XP_003625551.1| chr1 54159742 54163075 +
3 domain predictions
1 GO term
Lj1g3v4996210.1
n.a. PREDICTED: tankyrase-2-like [Cicer arietinum] gi|502114478|ref|XP_004494966.1| chr1 60685863 60687157 +
3 domain predictions
1 GO term
Lj1g3v4998510.1
n.a. PREDICTED: ankyrin repeat domain-containing protein 13C-B-like [Glycine max] gi|356505985|ref|XP_003521769.1| chr1 60819895 60824004 -
2 domain predictions
1 GO term
Lj1g3v5062770.1
n.a. PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X3 [Cicer arietinum] gi|502114219|ref|XP_004494898.1| chr1 62269429 62270183 +
2 domain predictions
1 GO term