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Lj1g3v3833900.1

Overview

Field Value
Gene ID Lj1g3v3833900
Transcript ID Lj1g3v3833900.1
Lotus japonicus genome version MG20 v3.0
Description Zinc finger A20 and AN1 domain-containing stress-associated protein [Medicago truncatula] gi|357512275|ref|XP_003626426.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10634
9 143 135 2.90E-51 –
PANTHER
PTHR10634:SF36
9 143 135 2.90E-51 –
SMART
SM00259
9 31 23 0.0034
IPR002653
SUPERFAMILY
SSF57716
11 44 34 2.14E-07 –
SUPERFAMILY
SSF118310
72 137 66 3.40E-27 –
Gene3D
G3DSA:4.10.1110.10
72 138 67 1.60E-26
IPR000058
ProSiteProfiles
PS51039
80 123 44 12.535
IPR000058
SMART
SM00154
83 120 38 1.60E-17
IPR000058
Pfam
PF01428
83 118 36 2.40E-10
IPR000058

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v3833900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3833900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.