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Lj1g3v3834000.1

Overview

Field Value
Gene ID Lj1g3v3834000
Transcript ID Lj1g3v3834000.1
Lotus japonicus genome version MG20 v3.0
Description F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
3 61 59 1.40E-24
IPR032675
SUPERFAMILY
SSF81383
3 59 57 8.37E-14
IPR001810
ProSiteProfiles
PS50181
4 52 49 12.677
IPR001810
PANTHER
PTHR32212:SF126
5 62 58 3.40E-52 –
PANTHER
PTHR32212
5 62 58 3.40E-52 –
Pfam
PF00646
6 40 35 5.00E-10
IPR001810
SMART
SM00256
10 51 42 1.20E-05
IPR001810
PANTHER
PTHR32212:SF126
102 261 160 3.40E-52 –
PANTHER
PTHR32212
102 261 160 3.40E-52 –
Gene3D
G3DSA:3.80.10.10
120 322 203 1.40E-24
IPR032675
SUPERFAMILY
SSF52047
127 264 138 2.28E-14 –
PANTHER
PTHR32212:SF126
278 326 49 3.40E-52 –
PANTHER
PTHR32212
278 326 49 3.40E-52 –
SUPERFAMILY
SSF52047
302 326 25 2.28E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj1g3v3834000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3834000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.