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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3858560 |
| Transcript ID | Lj1g3v3858560.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: actin-related protein 2-like [Glycine max] gi|356571581|ref|XP_003553955.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 389 | 389 | 1.60E-249 | ||
| PANTHER | 1 | 389 | 389 | 1.60E-249 | ||
| SUPERFAMILY | 2 | 154 | 153 | 5.18E-50 | – | |
| Gene3D | 2 | 186 | 185 | 8.90E-61 | – | |
| Pfam | 2 | 385 | 384 | 1.10E-109 | ||
| SMART | 4 | 387 | 384 | 3.30E-195 | ||
| CDD | 7 | 190 | 184 | 6.47E-15 | – | |
| PRINTS | 25 | 34 | 10 | 1.70E-28 | ||
| PRINTS | 62 | 84 | 23 | 1.70E-28 | ||
| PRINTS | 116 | 129 | 14 | 1.70E-28 | ||
| PRINTS | 141 | 160 | 20 | 1.70E-28 | ||
| SUPERFAMILY | 147 | 385 | 239 | 4.75E-72 | – | |
| Gene3D | 187 | 257 | 71 | 1.20E-32 | – | |
| PRINTS | 237 | 253 | 17 | 1.70E-28 | ||
| Gene3D | 258 | 384 | 127 | 1.30E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoskeleton | Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. | ||
| Cellular component | Arp2/3 protein complex | A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments. | ||
| Biological process | Actin filament organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. | ||
| Biological process | Arp2/3 complex-mediated actin nucleation | The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins. |
Expression pattern of Lj1g3v3858560.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3858560.2, powered by CORGI.
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