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GO:0005856

Overview

Field Value
Namespace Cellular component
Short description Cytoskeleton
Full defintion Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
Subterm of

Relationships

The relationship of GO:0005856 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah
ISBN
Oxford Dictionary of Biochemistry and Molecular BiologyOxford Dictionary of Biochemistry and Molecular Biology

Anthony David Smith · ISBN: 0198547684

Oxford University Press, USA, 1997 · 762 pages

Arranged in A-to-Z order, the more than 17,000 entries provide basic information about fundamental, physiochemical laws, chemical compounds, constants, and formulae. The Dictionary also describes the essential features of some 2,000 enzymes and proteins, the reactions they catalyze and the functions they perform. These entries also include filenames to facilitate the location of entries in databases of sequences and definitions of 950 abbreviations and symbols. Designed for students, teachers, researchers and other professionals in any area of the biomedical sciences, the Dictionary has been fully updated anf revised to incorporate new information discovered since the original edition was published in 1997.

PMID
The bacterial cytoskeleton.
Microbiol Mol Biol Rev. ; 70 (3): 729–54.PMID: 16959967

In recent years it has been shown that bacteria contain a number of cytoskeletal structures. The bacterial cytoplasmic elements include homologs of the three major types of eukaryotic cytoskeletal proteins (actin, tubulin, and intermediate filament proteins) and a fourth group, the MinD-ParA group, that appears to be unique to bacteria. The cytoskeletal structures play important roles in cell division, cell polarity, cell shape regulation, plasmid partition, and other functions. The proteins self-assemble into filamentous structures in vitro and form intracellular ordered structures in vivo. In addition, there are a number of filamentous bacterial elements that may turn out to be cytoskeletal in nature. This review attempts to summarize and integrate the in vivo and in vitro aspects of these systems and to evaluate the probable future directions of this active research field.

Associated Lotus transcripts 23

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: actin-related protein 2/3 complex subunit 3-like [Glycine max] gi|356562945|ref|XP_003549728.1| 4
Actin-related protein [Pericallis cruenta] gi|478686582|gb|AGJ50593.1| 5
PREDICTED: kinesin-like calmodulin-binding protein homolog [Glycine max] gi|356540898|ref|XP_003538921.1| 1
PREDICTED: actin-related protein 2-like [Glycine max] gi|356571581|ref|XP_003553955.1| 5
PREDICTED: actin-related protein 2-like [Glycine max] gi|356571581|ref|XP_003553955.1| 5
PREDICTED: kinesin-like calmodulin-binding protein homolog [Glycine max] gi|356531307|ref|XP_003534219.1| 1
PREDICTED: kinesin-like calmodulin-binding protein homolog [Glycine max] gi|356540898|ref|XP_003538921.1| 1
PREDICTED: protein SCAR2-like isoform X2 [Cicer arietinum] gi|502147559|ref|XP_004506831.1| 2
PREDICTED: protein SCAR2-like isoform X1 [Cicer arietinum] gi|502147557|ref|XP_004506830.1| 2
PREDICTED: actin-related protein 2/3 complex subunit 3-like [Glycine max] gi|356562945|ref|XP_003549728.1| 4
PREDICTED: protein SCAR3-like [Glycine max] gi|356528322|ref|XP_003532753.1| 2
SCAR2, putative; TAIR: AT2G38440.1 SCAR homolog 2; Swiss-Prot: sp|Q5XPJ9|SCAR2_ARATH Protein SCAR2; TrEMBL-Plants: tr|G7KV36|G7KV36_MEDTR SCAR2, putative; Found in the gene: LotjaGi1g1v0449800 2
Actin; TAIR: AT3G27000.1 actin related protein 2; Swiss-Prot: sp|Q9LSD6|ARP2_ARATH Actin-related protein 2; TrEMBL-Plants: tr|A0A151RJ90|A0A151RJ90_CAJCA Actin-related protein 2; Found in the gene: LotjaGi1g1v0627800 5
Kinesin-like protein; TAIR: AT5G65930.2 kinesin-like calmodulin-binding protein (ZWICHEL); Swiss-Prot: sp|Q7XPJ0|KN14I_ORYSJ Kinesin-like protein KIN-14I; TrEMBL-Plants: tr|I1J891|I1J891_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351000 1
Kinesin-like protein; TAIR: AT5G65930.2 kinesin-like calmodulin-binding protein (ZWICHEL); Swiss-Prot: sp|Q7XPJ0|KN14I_ORYSJ Kinesin-like protein KIN-14I; TrEMBL-Plants: tr|I1J891|I1J891_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351000 1
Protein SCAR2; TAIR: AT2G38440.1 SCAR homolog 2; Swiss-Prot: sp|Q5XPJ9|SCAR2_ARATH Protein SCAR2; TrEMBL-Plants: tr|A0A0B2RJ71|A0A0B2RJ71_GLYSO Protein SCAR2; Found in the gene: LotjaGi3g1v0202300 2
Protein SCAR2; TAIR: AT2G38440.1 SCAR homolog 2; Swiss-Prot: sp|Q5XPJ9|SCAR2_ARATH Protein SCAR2; TrEMBL-Plants: tr|A0A0B2RJ71|A0A0B2RJ71_GLYSO Protein SCAR2; Found in the gene: LotjaGi3g1v0202300 2
Kinesin-like protein; TAIR: AT5G65930.2 kinesin-like calmodulin-binding protein (ZWICHEL); Swiss-Prot: sp|Q7XPJ0|KN14I_ORYSJ Kinesin-like protein KIN-14I; TrEMBL-Plants: tr|I1L4M5|I1L4M5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0141300 1
Kinesin-like protein; TAIR: AT5G65930.2 kinesin-like calmodulin-binding protein (ZWICHEL); Swiss-Prot: sp|Q7XPJ0|KN14I_ORYSJ Kinesin-like protein KIN-14I; TrEMBL-Plants: tr|G7L7W2|G7L7W2_MEDTR Kinesin-like calmodulin-binding protein; Found in the gene: LotjaGi4g1v0141300 1
Actin-related protein 2/3 complex subunit 3; TAIR: AT1G60430.1 actin-related protein C3; Swiss-Prot: sp|Q1ECJ7|ARPC3_ARATH Actin-related protein 2/3 complex subunit 3; TrEMBL-Plants: tr|I1MU29|I1MU29_SOYBN Actin-related protein 2/3 complex subunit 3; Found in the gene: LotjaGi4g1v0279300 4
Actin-related protein 2/3 complex subunit 3; TAIR: AT1G60430.1 actin-related protein C3; Swiss-Prot: sp|Q1ECJ7|ARPC3_ARATH Actin-related protein 2/3 complex subunit 3; TrEMBL-Plants: tr|I1MU29|I1MU29_SOYBN Actin-related protein 2/3 complex subunit 3; Found in the gene: LotjaGi4g1v0279300 4
Actin-related protein 2/3 complex subunit 3; TAIR: AT1G60430.4 actin-related protein C3; Swiss-Prot: sp|Q1ECJ7|ARPC3_ARATH Actin-related protein 2/3 complex subunit 3; TrEMBL-Plants: tr|A0A0B2SS74|A0A0B2SS74_GLYSO Actin-related protein 2/3 complex subunit 3; Found in the gene: LotjaGi4g1v0279300 4
SCAR family protein; TAIR: AT2G34150.2 SCAR family protein; Swiss-Prot: sp|Q6AWX6|SCAR1_ARATH Protein SCAR1; TrEMBL-Plants: tr|A0A0B2PFQ0|A0A0B2PFQ0_GLYSO Protein SCAR1; Found in the gene: LotjaGi4g1v0377900 2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Biological process Actin cytoskeleton organization 1 4.35