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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3946000 |
| Transcript ID | Lj1g3v3946000.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Aquaporin SIP1-2 [Medicago truncatula] gi|357508577|ref|XP_003624577.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 247 | 247 | 1.20E-99 | – | |
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 247 | 247 | 1.20E-99 | ||
| SUPERFAMILY | 4 | 239 | 236 | 1.83E-37 | ||
| Pfam | 4 | 231 | 228 | 3.50E-16 | ||
| Gene3D | 5 | 245 | 241 | 1.60E-37 | ||
| PRINTS | 6 | 25 | 20 | 2.20E-16 | ||
| Phobius | 12 | 33 | 22 | – | – | |
| TMHMM | 13 | 32 | 20 | – | – | |
| Phobius | 34 | 44 | 11 | – | – | |
| Phobius | 45 | 68 | 24 | – | – | |
| TMHMM | 52 | 74 | 23 | – | – | |
| PRINTS | 58 | 82 | 25 | 2.20E-16 | ||
| Phobius | 69 | 101 | 33 | – | – | |
| TMHMM | 95 | 117 | 23 | – | – | |
| PRINTS | 97 | 116 | 20 | 2.20E-16 | ||
| Phobius | 102 | 120 | 19 | – | – | |
| Phobius | 121 | 139 | 19 | – | – | |
| TMHMM | 137 | 159 | 23 | – | – | |
| Phobius | 140 | 160 | 21 | – | – | |
| PRINTS | 143 | 161 | 19 | 2.20E-16 | ||
| Phobius | 161 | 171 | 11 | – | – | |
| TMHMM | 171 | 193 | 23 | – | – | |
| Phobius | 172 | 193 | 22 | – | – | |
| PRINTS | 174 | 196 | 23 | 2.20E-16 | ||
| Phobius | 194 | 212 | 19 | – | – | |
| TMHMM | 213 | 235 | 23 | – | – | |
| Phobius | 213 | 235 | 23 | – | – | |
| PRINTS | 214 | 234 | 21 | 2.20E-16 | ||
| Phobius | 236 | 247 | 12 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v3946000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3946000.1, powered by CORGI.
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