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Lj1g3v3964520.1

Overview

Field Value
Gene ID Lj1g3v3964520
Transcript ID Lj1g3v3964520.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GATA transcription factor 9-like [Glycine max] gi|356571686|ref|XP_003554005.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10071
1 142 142 7.30E-71 –
PANTHER
PTHR10071:SF161
1 142 142 7.30E-71 –
Coils
Coil
26 46 21 – –
SMART
SM00401
73 123 51 7.90E-15
IPR000679
SUPERFAMILY
SSF57716
74 137 64 3.33E-15 –
ProSiteProfiles
PS50114
77 109 33 11.095
IPR000679
Gene3D
G3DSA:3.30.50.10
77 114 38 5.60E-14
IPR013088
CDD
cd00202
78 125 48 1.77E-12 –
ProSitePatterns
PS00344
79 104 26 –
IPR000679
Pfam
PF00320
79 113 35 4.90E-15
IPR000679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj1g3v3964520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3964520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.