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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000679
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 59 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.312s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0097299.1
n.a. PREDICTED: GATA transcription factor 18-like [Cicer arietinum] gi|502161141|ref|XP_004512046.1| chr0 41113812 41115536 +
5 domain predictions
3 GO terms
Lj0g3v0164269.1
n.a. PREDICTED: GATA transcription factor 25-like [Cicer arietinum] gi|502133138|ref|XP_004501661.1| chr0 77770838 77774369 +
5 domain predictions
3 GO terms
Lj0g3v0167569.1
n.a. PREDICTED: GATA transcription factor 18-like [Cicer arietinum] gi|502161141|ref|XP_004512046.1| chr0 79767665 79768712 +
5 domain predictions
3 GO terms
Lj0g3v0224429.1
n.a. PREDICTED: GATA transcription factor 26-like [Glycine max] gi|356510812|ref|XP_003524128.1| chr0 115910633 115917540 -
5 domain predictions
3 GO terms
Lj0g3v0273489.1
n.a. GATA transcription factor [Medicago truncatula] gi|357481109|ref|XP_003610840.1| chr0 141757396 141762869 -
5 domain predictions
3 GO terms
Lj1g3v0162600.1
n.a. PREDICTED: GATA transcription factor 25-like [Glycine max] gi|356498865|ref|XP_003518268.1| chr1 1903553 1910420 -
5 domain predictions
3 GO terms
Lj1g3v1537660.1
n.a. PREDICTED: GATA transcription factor 24-like isoform 1 [Glycine max] gi|356508042|ref|XP_003522771.1| chr1 18443438 18448001 -
5 domain predictions
3 GO terms
Lj1g3v2069900.1
n.a. PREDICTED: GATA transcription factor 12-like [Cicer arietinum] gi|502131913|ref|XP_004501147.1| chr1 24561214 24563394 -
5 domain predictions
3 GO terms
Lj1g3v3964520.1
n.a. PREDICTED: GATA transcription factor 9-like [Glycine max] gi|356571686|ref|XP_003554005.1| chr1 46450262 46453233 -
5 domain predictions
3 GO terms
Lj1g3v3964530.1
n.a. PREDICTED: GATA transcription factor 9-like [Glycine max] gi|356571686|ref|XP_003554005.1| chr1 46451698 46453233 -
5 domain predictions
3 GO terms
Lj2g3v1757260.1
n.a. PREDICTED: GATA transcription factor 18-like [Cicer arietinum] gi|502161141|ref|XP_004512046.1| chr2 26974150 26975807 -
5 domain predictions
3 GO terms
Lj2g3v1989050.1
n.a. PREDICTED: GATA transcription factor 26-like [Glycine max] gi|356541236|ref|XP_003539085.1| chr2 29707650 29713950 -
5 domain predictions
3 GO terms
Lj3g3v1075120.1
n.a. PREDICTED: GATA transcription factor 10-like [Glycine max] gi|356543476|ref|XP_003540186.1| chr3 14517915 14521856 -
5 domain predictions
3 GO terms
Lj3g3v2057510.1
n.a. PREDICTED: GATA transcription factor 28-like [Glycine max] gi|356526306|ref|XP_003531759.1| chr3 26459882 26465357 +
5 domain predictions
3 GO terms
Lj3g3v2315420.1
n.a. PREDICTED: GATA transcription factor 9-like [Glycine max] gi|356522968|ref|XP_003530114.1| chr3 28334367 28335829 -
5 domain predictions
3 GO terms
Lj3g3v2315420.2
n.a. PREDICTED: GATA transcription factor 9-like [Glycine max] gi|356522968|ref|XP_003530114.1| chr3 28334367 28335829 -
5 domain predictions
3 GO terms
Lj3g3v2315420.3
n.a. PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 9-like [Glycine max] gi|356526093|ref|XP_003531654.1| chr3 28334367 28335829 -
5 domain predictions
3 GO terms
Lj3g3v3386580.1
n.a. GATA transcription factor [Medicago truncatula] gi|357473525|ref|XP_003607047.1| chr3 41777857 41779293 +
5 domain predictions
3 GO terms
Lj4g3v0386050.1
n.a. PREDICTED: GATA transcription factor 24-like [Glycine max] gi|356528009|ref|XP_003532598.1| chr4 5023031 5029035 +
5 domain predictions
3 GO terms
Lj4g3v1010080.1
n.a. PREDICTED: GATA transcription factor 5-like [Cicer arietinum] gi|502153411|ref|XP_004509331.1| chr4 14539456 14541137 +
5 domain predictions
3 GO terms
Lj4g3v2140320.1
n.a. PREDICTED: GATA transcription factor 21-like [Glycine max] gi|356550705|ref|XP_003543725.1| chr4 29703549 29705820 -
5 domain predictions
3 GO terms
Lj5g3v0404820.1
n.a. GATA transcription factor [Medicago truncatula] gi|357437437|ref|XP_003588994.1| chr5 3786967 3789689 -
5 domain predictions
3 GO terms
Lj5g3v1811810.1
n.a. PREDICTED: GATA transcription factor 8-like isoform X1 [Cicer arietinum] gi|502118446|ref|XP_004496271.1| chr5 25979395 25983440 +
5 domain predictions
3 GO terms
Lj5g3v1811810.2
n.a. PREDICTED: GATA transcription factor 8-like isoform X1 [Cicer arietinum] gi|502118446|ref|XP_004496271.1| chr5 25980761 25983440 +
5 domain predictions
3 GO terms
Lj6g3v1270770.1
n.a. PREDICTED: GATA transcription factor 21-like [Glycine max] gi|356532708|ref|XP_003534913.1| chr6 15450096 15452265 +
5 domain predictions
3 GO terms
LotjaGi1g1v0136300.1
n.a. GATA transcription factor; TAIR: AT4G24470.1 GATA-type zinc finger protein with TIFY domain-containing protein; Swiss-Prot: sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25; TrEMBL-Plants: tr|A0A0S3RM66|A0A0S3RM66_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0136300 LjG1.1_chr1 22201054 22208042 -
6 domain predictions
3 GO terms
LotjaGi1g1v0344700.1
n.a. GATA transcription factor; TAIR: AT3G21175.2 ZIM-like 1; Swiss-Prot: sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24; TrEMBL-Plants: tr|I1JV87|I1JV87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0344700 LjG1.1_chr1 81098267 81103289 -
6 domain predictions
3 GO terms
LotjaGi1g1v0344800.1
n.a. GATA transcription factor; TAIR: AT4G24470.1 GATA-type zinc finger protein with TIFY domain-containing protein; Swiss-Prot: sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25; TrEMBL-Plants: tr|G7J4K3|G7J4K3_MEDTR GATA transcription factor; Found in the gene: LotjaGi1g1v0344800 LjG1.1_chr1 81103355 81109340 -
6 domain predictions
3 GO terms
LotjaGi1g1v0406400.1
n.a. GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|V7AUH9|V7AUH9_PHAVU GATA transcription factor; Found in the gene: LotjaGi1g1v0406400 LjG1.1_chr1 89521904 89524386 -
6 domain predictions
3 GO terms
LotjaGi1g1v0563800.1
n.a. GATA transcription factor; TAIR: AT4G36240.1 GATA transcription factor 7; Swiss-Prot: sp|O65515|GATA7_ARATH GATA transcription factor 7; TrEMBL-Plants: tr|I1K730|I1K730_SOYBN GATA transcription factor; Found in the gene: LotjaGi1g1v0563800 LjG1.1_chr1 109686971 109689433 -
6 domain predictions
3 GO terms
LotjaGi1g1v0640700.1
n.a. GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|V7CYD3|V7CYD3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0640700 LjG1.1_chr1 119765334 119768564 -
6 domain predictions
3 GO terms
LotjaGi1g1v0747100.1
n.a. GATA transcription factor, putative; TAIR: AT3G06740.1 GATA transcription factor 15; Swiss-Prot: sp|Q8LG10|GAT15_ARATH GATA transcription factor 15; TrEMBL-Plants: tr|G7KWI0|G7KWI0_MEDTR GATA type zinc finger transcription factor family protein; Found in the gene: LotjaGi1g1v0747100 LjG1.1_chr1 131996889 131998694 -
6 domain predictions
3 GO terms
LotjaGi2g1v0384600.1
n.a. GATA transcription factor; TAIR: AT5G66320.1 GATA transcription factor 5; Swiss-Prot: sp|Q9FH57|GATA5_ARATH GATA transcription factor 5; TrEMBL-Plants: tr|I1J8P1|I1J8P1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0384600 LjG1.1_chr2 88099015 88100992 -
6 domain predictions
3 GO terms
LotjaGi2g1v0384600.2
n.a. GATA transcription factor; TAIR: AT5G66320.1 GATA transcription factor 5; Swiss-Prot: sp|Q9FH57|GATA5_ARATH GATA transcription factor 5; TrEMBL-Plants: tr|A0A0R0LC16|A0A0R0LC16_SOYBN GATA transcription factor; Found in the gene: LotjaGi2g1v0384600 LjG1.1_chr2 88099203 88100993 -
6 domain predictions
3 GO terms
LotjaGi2g1v0390100.1
n.a. GATA transcription factor, putative; TAIR: AT3G50870.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q8LC79|GAT18_ARATH GATA transcription factor 18; TrEMBL-Plants: tr|A0A1J7FXI9|A0A1J7FXI9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0390100 LjG1.1_chr2 88593486 88595390 -
6 domain predictions
3 GO terms
LotjaGi2g1v0419600.1
n.a. GATA transcription factor-like protein; TAIR: AT4G17570.3 GATA transcription factor 26; Swiss-Prot: sp|Q8W4H1|GAT26_ARATH GATA transcription factor 26; TrEMBL-Plants: tr|I1LGU6|I1LGU6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0419600 LjG1.1_chr2 91768205 91774519 -
6 domain predictions
3 GO terms
LotjaGi3g1v0050600.1
n.a. GATA transcription factor; TAIR: AT2G45050.1 GATA transcription factor 2; Swiss-Prot: sp|O49741|GATA2_ARATH GATA transcription factor 2; TrEMBL-Plants: tr|I1JMW7|I1JMW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0050600 LjG1.1_chr3 5270472 5271944 -
6 domain predictions
3 GO terms
LotjaGi3g1v0163800.1
n.a. GATA transcription factor; TAIR: AT1G08010.1 GATA transcription factor 11; Swiss-Prot: sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11; TrEMBL-Plants: tr|A0A151S5F9|A0A151S5F9_CAJCA GATA transcription factor 6; Found in the gene: LotjaGi3g1v0163800 LjG1.1_chr3 22284091 22288354 -
6 domain predictions
3 GO terms
LotjaGi3g1v0345600.1
n.a. GATA transcription factor; TAIR: AT1G51600.1 ZIM-LIKE 2; Swiss-Prot: sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28; TrEMBL-Plants: tr|A0A151RPA5|A0A151RPA5_CAJCA GATA transcription factor 25; Found in the gene: LotjaGi3g1v0345600 LjG1.1_chr3 72315340 72324758 +
6 domain predictions
3 GO terms
LotjaGi3g1v0345600.2
n.a. GATA transcription factor; TAIR: AT1G51600.1 ZIM-LIKE 2; Swiss-Prot: sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28; TrEMBL-Plants: tr|A0A151RPA5|A0A151RPA5_CAJCA GATA transcription factor 25; Found in the gene: LotjaGi3g1v0345600 LjG1.1_chr3 72315345 72324837 +
6 domain predictions
3 GO terms
LotjaGi3g1v0345600.3
n.a. GATA transcription factor; TAIR: AT1G51600.1 ZIM-LIKE 2; Swiss-Prot: sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28; TrEMBL-Plants: tr|A0A151RPA5|A0A151RPA5_CAJCA GATA transcription factor 25; Found in the gene: LotjaGi3g1v0345600 LjG1.1_chr3 72316036 72319584 +
5 domain predictions
3 GO terms
LotjaGi3g1v0345600.4
n.a. GATA transcription factor; TAIR: AT1G51600.1 ZIM-LIKE 2; Swiss-Prot: sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28; TrEMBL-Plants: tr|A0A151RPA5|A0A151RPA5_CAJCA GATA transcription factor 25; Found in the gene: LotjaGi3g1v0345600 LjG1.1_chr3 72316136 72319786 +
5 domain predictions
3 GO terms
LotjaGi3g1v0369100.1
n.a. GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|V7ASR6|V7ASR6_PHAVU GATA transcription factor; Found in the gene: LotjaGi3g1v0369100 LjG1.1_chr3 75570076 75572204 -
6 domain predictions
3 GO terms
LotjaGi3g1v0369100.2
n.a. GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|V7ASR6|V7ASR6_PHAVU GATA transcription factor; Found in the gene: LotjaGi3g1v0369100 LjG1.1_chr3 75570076 75572204 -
6 domain predictions
3 GO terms
LotjaGi3g1v0514000.1
n.a. GATA transcription factor; TAIR: AT3G51080.1 GATA transcription factor 6; Swiss-Prot: sp|Q9SD38|GATA6_ARATH GATA transcription factor 6; TrEMBL-Plants: tr|A0A151RII0|A0A151RII0_CAJCA GATA transcription factor; Found in the gene: LotjaGi3g1v0514000 LjG1.1_chr3 93123797 93126072 +
6 domain predictions
3 GO terms
LotjaGi4g1v0040200.1
n.a. GATA transcription factor; TAIR: AT3G21175.1 ZIM-like 1; Swiss-Prot: sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24; TrEMBL-Plants: tr|I1KL59|I1KL59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0040200 LjG1.1_chr4 4747590 4753678 +
6 domain predictions
3 GO terms
LotjaGi4g1v0117700.1
n.a. GATA transcription factor, putative; TAIR: AT3G50870.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q8LC79|GAT18_ARATH GATA transcription factor 18; TrEMBL-Plants: tr|V7CGJ5|V7CGJ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0117700 LjG1.1_chr4 17032326 17034162 +
6 domain predictions
3 GO terms
LotjaGi4g1v0124800.1
n.a. GATA transcription factor; TAIR: AT5G66320.1 GATA transcription factor 5; Swiss-Prot: sp|Q9FH57|GATA5_ARATH GATA transcription factor 5; TrEMBL-Plants: tr|A0A061DFE1|A0A061DFE1_THECC GATA transcription factor 5, putative; Found in the gene: LotjaGi4g1v0124800 LjG1.1_chr4 18161137 18163018 +
6 domain predictions
3 GO terms
LotjaGi4g1v0124800.2
n.a. GATA transcription factor; TAIR: AT5G66320.1 GATA transcription factor 5; Swiss-Prot: sp|Q9FH57|GATA5_ARATH GATA transcription factor 5; TrEMBL-Plants: tr|A0A061DFE1|A0A061DFE1_THECC GATA transcription factor 5, putative; Found in the gene: LotjaGi4g1v0124800 LjG1.1_chr4 18161190 18162911 +
6 domain predictions
3 GO terms
LotjaGi4g1v0196600.1
n.a. GATA transcription factor-like protein; TAIR: AT4G17570.3 GATA transcription factor 26; Swiss-Prot: sp|Q8W4H1|GAT26_ARATH GATA transcription factor 26; TrEMBL-Plants: tr|I1K0V3|I1K0V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0196600 LjG1.1_chr4 45180305 45187235 -
6 domain predictions
3 GO terms