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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4012770 |
| Transcript ID | Lj1g3v4012770.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: zinc finger protein VAR3, chloroplastic-like [Cicer arietinum] gi|502107370|ref|XP_004493243.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 8 | 16 | 9 | – | – | |
| Phobius | 17 | 21 | 5 | – | – | |
| Phobius | 22 | 816 | 795 | – | – | |
| MobiDBLite | 38 | 81 | 44 | – | – | |
| PANTHER | 76 | 494 | 419 | 1.70E-247 | – | |
| PANTHER | 76 | 494 | 419 | 1.70E-247 | – | |
| Gene3D | 251 | 287 | 37 | 3.80E-14 | ||
| SUPERFAMILY | 253 | 287 | 35 | 4.19E-07 | ||
| ProSiteProfiles | 258 | 287 | 30 | 10.387 | ||
| Pfam | 259 | 286 | 28 | 1.40E-07 | ||
| SMART | 260 | 284 | 25 | 5.10E-06 | ||
| ProSitePatterns | 262 | 281 | 20 | – | ||
| Gene3D | 288 | 320 | 33 | 2.90E-06 | ||
| ProSiteProfiles | 291 | 320 | 30 | 9.202 | ||
| SMART | 293 | 317 | 25 | 0.2 | ||
| ProSitePatterns | 295 | 314 | 20 | – | ||
| MobiDBLite | 414 | 482 | 69 | – | – | |
| MobiDBLite | 506 | 532 | 27 | – | – | |
| PANTHER | 530 | 597 | 68 | 1.70E-247 | – | |
| PANTHER | 530 | 597 | 68 | 1.70E-247 | – | |
| MobiDBLite | 615 | 773 | 159 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj1g3v4012770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4012770.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.