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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4205490 |
| Transcript ID | Lj1g3v4205490.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Phosphatidylinositol N-acetylglucosaminyltransferase subunit GPI1 [Medicago truncatula] gi|357509561|ref|XP_003625069.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 90 | 90 | – | – | |
| PANTHER | 7 | 333 | 327 | 4.00E-95 | – | |
| PANTHER | 7 | 333 | 327 | 4.00E-95 | – | |
| Phobius | 91 | 118 | 28 | – | – | |
| TMHMM | 95 | 117 | 23 | – | – | |
| Phobius | 119 | 186 | 68 | – | – | |
| TMHMM | 185 | 207 | 23 | – | – | |
| Pfam | 186 | 333 | 148 | 2.30E-30 | ||
| Phobius | 187 | 207 | 21 | – | – | |
| Phobius | 208 | 213 | 6 | – | – | |
| Phobius | 214 | 235 | 22 | – | – | |
| TMHMM | 214 | 236 | 23 | – | – | |
| Phobius | 236 | 246 | 11 | – | – | |
| Phobius | 247 | 273 | 27 | – | – | |
| TMHMM | 251 | 273 | 23 | – | – | |
| Phobius | 274 | 279 | 6 | – | – | |
| TMHMM | 280 | 302 | 23 | – | – | |
| Phobius | 280 | 304 | 25 | – | – | |
| Phobius | 305 | 309 | 5 | – | – | |
| Phobius | 310 | 332 | 23 | – | – | |
| TMHMM | 312 | 332 | 21 | – | – | |
| Phobius | 333 | 333 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Phosphatidylinositol N-acetylglucosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + phosphatidylinositol = UDP + N-acetyl-D-glucosaminylphosphatidylinositol. |
Expression pattern of Lj1g3v4205490.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4205490.2, powered by CORGI.
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