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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4287670 |
| Transcript ID | Lj1g3v4287670.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Oligopeptide transporter OPT family [Medicago truncatula] gi|357509765|ref|XP_003625171.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 49 | 49 | – | – | |
| MobiDBLite | 1 | 22 | 22 | – | – | |
| PANTHER | 10 | 553 | 544 | 0 | – | |
| PANTHER | 10 | 553 | 544 | 0 | – | |
| TIGRFAM | 26 | 616 | 591 | 7.50E-150 | ||
| TIGRFAM | 32 | 604 | 573 | 5.20E-171 | ||
| Pfam | 48 | 588 | 541 | 2.90E-134 | ||
| Phobius | 50 | 70 | 21 | – | – | |
| TMHMM | 53 | 72 | 20 | – | – | |
| Phobius | 71 | 81 | 11 | – | – | |
| Phobius | 82 | 101 | 20 | – | – | |
| Phobius | 102 | 125 | 24 | – | – | |
| TMHMM | 126 | 148 | 23 | – | – | |
| Phobius | 126 | 152 | 27 | – | – | |
| Phobius | 153 | 158 | 6 | – | – | |
| TMHMM | 155 | 177 | 23 | – | – | |
| Phobius | 159 | 176 | 18 | – | – | |
| Phobius | 177 | 187 | 11 | – | – | |
| TMHMM | 187 | 204 | 18 | – | – | |
| Phobius | 188 | 204 | 17 | – | – | |
| Phobius | 205 | 215 | 11 | – | – | |
| Phobius | 216 | 234 | 19 | – | – | |
| TMHMM | 220 | 242 | 23 | – | – | |
| Phobius | 235 | 292 | 58 | – | – | |
| Phobius | 293 | 315 | 23 | – | – | |
| TMHMM | 293 | 315 | 23 | – | – | |
| Phobius | 316 | 427 | 112 | – | – | |
| TMHMM | 428 | 450 | 23 | – | – | |
| Phobius | 428 | 449 | 22 | – | – | |
| Phobius | 450 | 454 | 5 | – | – | |
| TMHMM | 454 | 476 | 23 | – | – | |
| Phobius | 455 | 476 | 22 | – | – | |
| Phobius | 477 | 651 | 175 | – | – | |
| PANTHER | 597 | 793 | 197 | 0 | – | |
| PANTHER | 597 | 793 | 197 | 0 | – | |
| Pfam | 599 | 753 | 155 | 2.70E-26 | ||
| TIGRFAM | 600 | 755 | 156 | 4.30E-46 | ||
| TMHMM | 651 | 673 | 23 | – | – | |
| Phobius | 652 | 672 | 21 | – | – | |
| Phobius | 673 | 702 | 30 | – | – | |
| Phobius | 703 | 721 | 19 | – | – | |
| TMHMM | 704 | 721 | 18 | – | – | |
| Phobius | 722 | 732 | 11 | – | – | |
| TMHMM | 733 | 755 | 23 | – | – | |
| Phobius | 733 | 754 | 22 | – | – | |
| Phobius | 755 | 794 | 40 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v4287670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4287670.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.