Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj1g3v4287690.1

Overview

Field Value
Gene ID Lj1g3v4287690
Transcript ID Lj1g3v4287690.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: adenylosuccinate synthetase 2, chloroplastic-like [Glycine max] gi|356572048|ref|XP_003554182.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap
MF_00011
1 487 487 179.821
IPR001114
PANTHER
PTHR11846
23 487 465 0
IPR001114
PANTHER
PTHR11846:SF0
23 487 465 0 –
Gene3D
G3DSA:3.40.440.10
64 156 93 2.10E-72 –
SMART
SM00788
65 486 422 4.10E-254
IPR001114
CDD
cd03108
65 479 415 0
IPR001114
SUPERFAMILY
SSF52540
65 485 421 2.87E-164
IPR027417
Pfam
PF00709
68 485 418 6.70E-175
IPR001114
TIGRFAM
TIGR00184
68 485 418 8.00E-159
IPR001114
ProSitePatterns
PS01266
72 79 8 –
IPR018220
Gene3D
G3DSA:1.10.300.10
164 257 94 2.70E-30 –
ProSitePatterns
PS00513
195 206 12 –
IPR033128
Gene3D
G3DSA:3.40.440.10
258 327 70 2.10E-72 –
Gene3D
G3DSA:3.90.170.10
328 486 159 1.10E-68 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004019
Molecular function Adenylosuccinate synthase activity Catalysis of the reaction: L-aspartate + GTP + IMP = N(6)-(1,2-dicarboxyethyl)-AMP + GDP + 3 H(+) + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006164
Biological process Purine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4287690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4287690.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.