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Lj1g3v4450290.2

Overview

Field	Value
Gene ID	Lj1g3v4450290
Transcript ID	Lj1g3v4450290.2
Related isoforms 1	Lj1g3v4450290.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: guanylate-binding protein 4-like [Cicer arietinum] gi\|502109817\|ref\|XP_004493734.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.40.50.300 View details on G3DSA:3.40.50.300 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.300	6	117	112	9.40E-25	IPR027417 Show description in modal box View details on IPR027417 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10751:SF38 View details on PTHR10751:SF38 Search for proteins/transripts with this domain View external data on PTHR10751:SF38	9	233	225	4.20E-150	–
PANTHER	PTHR10751 View details on PTHR10751 Search for proteins/transripts with this domain View external data on PTHR10751	9	233	225	4.20E-150	–
SUPERFAMILY	SSF48340 View details on SSF48340 Search for proteins/transripts with this domain View external data on SSF48340	117	233	117	1.15E-24	IPR003191 Show description in modal box View details on IPR003191 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.20.1000.10 View details on G3DSA:1.20.1000.10 Search for proteins/transripts with this domain View external data on G3DSA:1.20.1000.10	118	232	115	2.40E-14	–
Pfam	PF02841 View details on PF02841 Search for proteins/transripts with this domain View external data on PF02841	118	233	116	5.90E-08	IPR003191 Show description in modal box View details on IPR003191 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	202	222	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003924 View details of GO:0003924 AmiGO InterPro QuickGO	Molecular function	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.	Subterm of View details of GO:0017111
GO:0005525 View details of GO:0005525 AmiGO InterPro QuickGO	Molecular function	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.	Subterm of View details of GO:0032550 View details of GO:0032561 View details of GO:0035639

Genome browser

LORE1 insertions 37

Expression data

Expression pattern

Expression pattern of Lj1g3v4450290.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4450290.2, powered by CORGI.

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