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Lj1g3v4515640.1

Overview

Field Value
Gene ID Lj1g3v4515640
Transcript ID Lj1g3v4515640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding protein 28-like [Glycine max] gi|356546384|ref|XP_003541606.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24012:SF411
1 144 144 3.70E-132 –
PANTHER
PTHR24012
1 144 144 3.70E-132 –
Gene3D
G3DSA:3.30.70.330
10 105 96 1.30E-19
IPR012677
ProSiteProfiles
PS50102
19 97 79 16.21
IPR000504
SUPERFAMILY
SSF54928
20 107 88 5.29E-24
IPR012677
SMART
SM00360
20 93 74 2.90E-21
IPR000504
CDD
cd12413
20 98 79 3.05E-30 –
SMART
SM00361
20 93 74 2.4
IPR003954
Pfam
PF00076
21 90 70 4.10E-15
IPR000504
MobiDBLite
mobidb-lite
88 155 68 – –
SUPERFAMILY
SSF54928
179 263 85 5.29E-24
IPR012677
Gene3D
G3DSA:3.30.70.330
270 360 91 1.90E-27
IPR012677
SUPERFAMILY
SSF54928
273 360 88 4.43E-28
IPR012677
PANTHER
PTHR24012
276 360 85 3.70E-132 –
PANTHER
PTHR24012:SF411
276 360 85 3.70E-132 –
ProSiteProfiles
PS50102
277 355 79 18.035
IPR000504
CDD
cd12414
278 354 77 7.42E-28 –
SMART
SM00360
278 351 74 1.00E-23
IPR000504
SMART
SM00361
278 351 74 0.55
IPR003954
Pfam
PF00076
279 347 69 2.90E-19
IPR000504
MobiDBLite
mobidb-lite
364 423 60 – –
MobiDBLite
mobidb-lite
439 492 54 – –
Gene3D
G3DSA:3.30.70.330
499 585 87 1.10E-17
IPR012677
SUPERFAMILY
SSF54928
500 593 94 6.56E-25
IPR012677
ProSiteProfiles
PS50102
500 583 84 15.187
IPR000504
CDD
cd12415
500 579 80 1.36E-21 –
SMART
SM00361
501 579 79 14
IPR003954
SMART
SM00360
501 579 79 5.90E-17
IPR000504
Pfam
PF00076
502 560 59 4.80E-13
IPR000504
Coils
Coil
578 605 28 – –
SUPERFAMILY
SSF54928
649 729 81 6.56E-25
IPR012677
Gene3D
G3DSA:3.30.70.330
651 745 95 1.40E-11
IPR012677
ProSiteProfiles
PS50102
652 741 90 10.991
IPR000504
CDD
cd12416
652 748 97 5.34E-39 –
SMART
SM00360
653 743 91 2.80E-07
IPR000504
MobiDBLite
mobidb-lite
757 943 187 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v4515640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4515640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.