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Lj1g3v4578710.1

Overview

Field Value
Gene ID Lj1g3v4578710
Transcript ID Lj1g3v4578710.1
Related isoforms 3
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: serine/arginine-rich splicing factor RS2Z32-like isoform X1 [Cicer arietinum] gi|502110926|ref|XP_004493914.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.70.330
5 85 81 2.40E-24
IPR012677
PANTHER
PTHR23147
6 99 94 1.10E-28 –
SUPERFAMILY
SSF54928
7 100 94 2.55E-24
IPR012677
ProSiteProfiles
PS50102
11 81 71 16.944
IPR000504
SMART
SM00360
12 77 66 1.30E-18
IPR000504
Pfam
PF00076
13 74 62 2.30E-15
IPR000504
SUPERFAMILY
SSF57756
91 139 49 1.43E-12
IPR001878
SMART
SM00343
100 116 17 1.30E-04
IPR001878
ProSiteProfiles
PS50158
100 115 16 10.18
IPR001878
Gene3D
G3DSA:4.10.60.10
100 138 39 1.50E-12
IPR001878
Pfam
PF00098
100 115 16 5.50E-06
IPR001878
Pfam
PF00098
121 138 18 2.80E-04
IPR001878
ProSiteProfiles
PS50158
122 138 17 10.444
IPR001878
SMART
SM00343
122 138 17 0.004
IPR001878
MobiDBLite
mobidb-lite
134 182 49 – –
PANTHER
PTHR23147
143 182 40 1.10E-28 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4578710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4578710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.