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Lj1g3v4931510.1

Overview

Field Value
Gene ID Lj1g3v4931510
Transcript ID Lj1g3v4931510.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable linoleate 9S-lipoxygenase 5-like [Glycine max] gi|356505853|ref|XP_003521704.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11771:SF48
8 215 208 2.50E-132 –
PANTHER
PTHR11771
8 215 208 2.50E-132
IPR000907
SMART
SM00308
13 156 144 1.20E-67
IPR001024
SUPERFAMILY
SSF49723
13 159 147 7.19E-57
IPR001024
CDD
cd01751
13 156 144 3.82E-58 –
Gene3D
G3DSA:2.60.60.20
17 168 152 4.20E-65
IPR001024
ProSiteProfiles
PS50095
25 155 131 26.638
IPR001024
Pfam
PF01477
54 154 101 5.30E-22
IPR001024
PRINTS
PR00468
125 143 19 2.90E-28
IPR001246
PRINTS
PR00468
151 172 22 2.90E-28
IPR001246
ProSiteProfiles
PS51393
158 215 58 28.834
IPR013819
SUPERFAMILY
SSF48484
160 215 56 5.89E-17
IPR013819
Pfam
PF00305
168 215 48 2.40E-17
IPR013819
Gene3D
G3DSA:4.10.375.10
169 215 47 3.20E-22 –
PRINTS
PR00468
190 206 17 2.90E-28
IPR001246

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016702
Molecular function Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v4931510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4931510.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.