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Lj1g3v5010650.1

Overview

Field Value
Gene ID Lj1g3v5010650
Transcript ID Lj1g3v5010650.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Cicer arietinum] gi|502077326|ref|XP_004485620.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 40 40 – –
PANTHER
PTHR18359
34 549 516 3.60E-219 –
MobiDBLite
mobidb-lite
172 201 30 – –
SMART
SM00320
237 276 40 0.45
IPR001680
SUPERFAMILY
SSF50978
244 543 300 9.77E-45
IPR017986
Gene3D
G3DSA:2.130.10.10
244 543 300 3.10E-41
IPR015943
Pfam
PF00400
248 275 28 0.19
IPR001680
SMART
SM00320
368 405 38 1.90E-05
IPR001680
Pfam
PF00400
370 405 36 0.0013
IPR001680
ProSiteProfiles
PS50294
374 414 41 8.993
IPR017986
ProSiteProfiles
PS50082
374 414 41 9.038
IPR001680
SMART
SM00320
408 448 41 6.6
IPR001680
Pfam
PF00400
421 448 28 0.19
IPR001680
SMART
SM00320
456 497 42 180
IPR001680
SMART
SM00320
500 542 43 2.7
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v5010650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5010650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.