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Lj1g3v5060590.1

Overview

Field Value
Gene ID Lj1g3v5060590
Transcript ID Lj1g3v5060590.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cicer arietinum] gi|502114130|ref|XP_004494871.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.70.330
79 172 94 2.40E-22
IPR012677
PANTHER
PTHR24012
83 165 83 3.40E-42 –
SUPERFAMILY
SSF54928
86 185 100 8.73E-24
IPR012677
ProSiteProfiles
PS50102
89 167 79 15.664
IPR000504
SMART
SM00360
90 163 74 1.40E-20
IPR000504
Pfam
PF00076
91 161 71 1.50E-16
IPR000504
CDD
cd00590
91 163 73 2.55E-18 –
SUPERFAMILY
SSF54928
189 270 82 1.88E-22
IPR012677
Gene3D
G3DSA:3.30.70.330
190 267 78 1.10E-20
IPR012677
PANTHER
PTHR24012
191 265 75 3.40E-42 –
ProSiteProfiles
PS50102
192 269 78 17.37
IPR000504
SMART
SM00360
193 265 73 1.20E-18
IPR000504
Pfam
PF00076
194 262 69 6.10E-16
IPR000504
CDD
cd00590
194 265 72 8.45E-19 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v5060590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5060590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.