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Lj1g3v5061020.1

Overview

Field Value
Gene ID Lj1g3v5061020
Transcript ID Lj1g3v5061020.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing transcription factor NGA1-like [Glycine max] gi|356571279|ref|XP_003553806.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
PANTHER
PTHR31140:SF4
44 335 292 1.60E-119 –
PANTHER
PTHR31140
44 335 292 1.60E-119 –
Gene3D
G3DSA:2.40.330.10
92 206 115 1.40E-40
IPR015300
SUPERFAMILY
SSF101936
100 191 92 1.19E-29
IPR015300
CDD
cd10017
101 190 90 1.38E-26
IPR003340
ProSiteProfiles
PS50863
103 208 106 14.269
IPR003340
SMART
SM01019
103 208 106 3.70E-23
IPR003340
Pfam
PF02362
103 207 105 6.10E-29
IPR003340
MobiDBLite
mobidb-lite
333 360 28 – –
PANTHER
PTHR31140
360 406 47 1.60E-119 –
PANTHER
PTHR31140:SF4
360 406 47 1.60E-119 –
MobiDBLite
mobidb-lite
380 429 50 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj1g3v5061020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5061020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.