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| Field | Value |
|---|---|
| Gene ID | Lj1g3v5062660 |
| Transcript ID | Lj1g3v5062660.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pumilio homolog 23-like [Glycine max] gi|356506124|ref|XP_003521837.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 63 | 63 | – | – | |
| PANTHER | 53 | 713 | 661 | 4.90E-167 | – | |
| PANTHER | 53 | 713 | 661 | 4.90E-167 | – | |
| SUPERFAMILY | 80 | 198 | 119 | 5.76E-21 | ||
| SMART | 96 | 131 | 36 | 440 | ||
| ProSiteProfiles | 128 | 167 | 40 | 7.077 | ||
| SMART | 132 | 167 | 36 | 1 | ||
| ProSiteProfiles | 175 | 198 | 24 | 4.534 | ||
| SUPERFAMILY | 244 | 285 | 42 | 5.76E-21 | ||
| SUPERFAMILY | 248 | 396 | 149 | 6.62E-30 | ||
| Gene3D | 252 | 395 | 144 | 2.10E-38 | ||
| ProSiteProfiles | 253 | 292 | 40 | 4.884 | ||
| ProSiteProfiles | 313 | 348 | 36 | 4.814 | ||
| SMART | 313 | 348 | 36 | 93 | ||
| ProSiteProfiles | 349 | 386 | 38 | 9.807 | ||
| SMART | 350 | 385 | 36 | 0.0017 | ||
| Pfam | 352 | 381 | 30 | 8.00E-06 | ||
| SUPERFAMILY | 466 | 591 | 126 | 6.62E-30 | ||
| ProSiteProfiles | 494 | 531 | 38 | 7.054 | ||
| SMART | 495 | 531 | 37 | 330 | ||
| Gene3D | 504 | 604 | 101 | 2.10E-38 | ||
| SMART | 532 | 567 | 36 | 33 | ||
| ProSiteProfiles | 532 | 567 | 36 | 7.241 | ||
| MobiDBLite | 653 | 727 | 75 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj1g3v5062660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v5062660.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.