Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v0092560.1

Overview

Field Value
Gene ID Lj2g3v0092560
Transcript ID Lj2g3v0092560.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] gi|356533163|ref|XP_003535137.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31674:SF1
1 128 128 3.10E-53 –
ProSiteProfiles
PS50863
1 65 65 10.278
IPR003340
PANTHER
PTHR31674
1 128 128 3.10E-53 –
CDD
cd10017
2 62 61 2.86E-07
IPR003340
SUPERFAMILY
SSF101936
3 72 70 5.30E-10
IPR015300
Gene3D
G3DSA:2.40.330.10
4 64 61 2.70E-10
IPR015300
MobiDBLite
mobidb-lite
105 125 21 – –
PANTHER
PTHR31674
193 286 94 3.10E-53 –
PANTHER
PTHR31674:SF1
193 286 94 3.10E-53 –
Gene3D
G3DSA:2.40.330.10
194 286 93 7.90E-23
IPR015300
SUPERFAMILY
SSF101936
195 287 93 1.82E-22
IPR015300
ProSiteProfiles
PS50863
198 289 92 13.592
IPR003340
Pfam
PF02362
199 286 88 7.40E-15
IPR003340
SMART
SM01019
199 289 91 2.90E-14
IPR003340
CDD
cd10017
199 287 89 7.64E-22
IPR003340
MobiDBLite
mobidb-lite
347 391 45 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v0092560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0092560.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.