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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0343900 |
| Transcript ID | Lj2g3v0343900.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Divalent ion symporter isoform 1 [Theobroma cacao] gi|508776000|gb|EOY23256.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | – | – | |
| PANTHER | 1 | 225 | 225 | 4.50E-259 | – | |
| PANTHER | 1 | 225 | 225 | 4.50E-259 | – | |
| Phobius | 9 | 27 | 19 | – | – | |
| TMHMM | 9 | 31 | 23 | – | – | |
| Pfam | 27 | 486 | 460 | 6.30E-54 | ||
| CDD | 28 | 489 | 462 | 3.41E-93 | – | |
| Phobius | 28 | 32 | 5 | – | – | |
| Phobius | 33 | 52 | 20 | – | – | |
| Phobius | 53 | 58 | 6 | – | – | |
| TMHMM | 57 | 79 | 23 | – | – | |
| Phobius | 59 | 79 | 21 | – | – | |
| Phobius | 80 | 183 | 104 | – | – | |
| TMHMM | 180 | 202 | 23 | – | – | |
| Phobius | 184 | 204 | 21 | – | – | |
| Phobius | 205 | 346 | 142 | – | – | |
| MobiDBLite | 282 | 315 | 34 | – | – | |
| PANTHER | 295 | 489 | 195 | 4.50E-259 | – | |
| PANTHER | 295 | 489 | 195 | 4.50E-259 | – | |
| Phobius | 347 | 378 | 32 | – | – | |
| TMHMM | 356 | 378 | 23 | – | – | |
| Phobius | 379 | 389 | 11 | – | – | |
| Phobius | 390 | 409 | 20 | – | – | |
| TMHMM | 391 | 413 | 23 | – | – | |
| Phobius | 410 | 429 | 20 | – | – | |
| Phobius | 430 | 447 | 18 | – | – | |
| TMHMM | 433 | 455 | 23 | – | – | |
| Phobius | 448 | 489 | 42 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v0343900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0343900.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.