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Lj2g3v0415160.1

Overview

Field Value
Gene ID Lj2g3v0415160
Transcript ID Lj2g3v0415160.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable methyltransferase PMT16-like [Glycine max] gi|356529267|ref|XP_003533217.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 28 28 – –
Phobius
TRANSMEMBRANE
29 46 18 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
47 623 577 – –
PANTHER
PTHR10108
88 324 237 7.40E-257 –
PANTHER
PTHR10108:SF861
88 324 237 7.40E-257 –
Pfam
PF03141
103 610 508 3.10E-224
IPR004159
SUPERFAMILY
SSF53335
125 329 205 1.33E-28
IPR029063
Gene3D
G3DSA:3.40.50.150
198 334 137 3.70E-13
IPR029063
SUPERFAMILY
SSF53335
456 573 118 5.45E-09
IPR029063
PANTHER
PTHR10108:SF861
502 599 98 7.40E-257 –
PANTHER
PTHR10108
502 599 98 7.40E-257 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj2g3v0415160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0415160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.