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Lj2g3v0690400.1

Overview

Field	Value
Gene ID	Lj2g3v0690400
Transcript ID	Lj2g3v0690400.1
Lotus japonicus genome version	MG20 v3.0
Description	Plastid movement impaired1 [Theobroma cacao] gi\|508717238\|gb\|EOY09135.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33414 View details on PTHR33414 Search for proteins/transripts with this domain View external data on PTHR33414	3	816	814	0	–
PANTHER	PTHR33414:SF2 View details on PTHR33414:SF2 Search for proteins/transripts with this domain View external data on PTHR33414:SF2	3	816	814	0	IPR033343 Show description in modal box View details on IPR033343 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	23	98	76	–	–
Pfam	PF10358 View details on PF10358 Search for proteins/transripts with this domain View external data on PF10358	138	288	151	5.80E-16	IPR019448 Show description in modal box View details on IPR019448 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	317	422	106	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	493	526	34	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0009902 View details of GO:0009902 AmiGO InterPro QuickGO	Biological process	Chloroplast relocation	The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery.	Subterm of View details of GO:0009658 View details of GO:0019750 View details of GO:0051667

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj2g3v0690400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v0690400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.