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Lj2g3v1020000.2

Overview

Field	Value
Gene ID	Lj2g3v1020000
Transcript ID	Lj2g3v1020000.2
Related isoforms 2	Lj2g3v1020000.1 Lj2g3v1020000.3
Lotus japonicus genome version	MG20 v3.0
Description	SAG101 [Medicago truncatula] gi\|357496089\|ref\|XP_003618333.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	38	214	177	4.39E-17	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	44	203	160	4.10E-24	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR21493:SF148 View details on PTHR21493:SF148 Search for proteins/transripts with this domain View external data on PTHR21493:SF148	45	468	424	3.90E-162	–
PANTHER	PTHR21493 View details on PTHR21493 Search for proteins/transripts with this domain View external data on PTHR21493	45	468	424	3.90E-162	–
Pfam	PF01764 View details on PF01764 Search for proteins/transripts with this domain View external data on PF01764	95	201	107	7.00E-19	IPR002921 Show description in modal box View details on IPR002921 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	297	324	28	–	–
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	514	545	32	4.10E-24	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006629 View details of GO:0006629 AmiGO InterPro QuickGO	Biological process	Lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.	Subterm of View details of GO:0044238 View details of GO:0071704

Genome browser

LORE1 insertions 32

Expression data

Expression pattern

Expression pattern of Lj2g3v1020000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1020000.2, powered by CORGI.

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