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Lj2g3v1020060.1

Overview

Field Value
Gene ID Lj2g3v1020060
Transcript ID Lj2g3v1020060.1
Lotus japonicus genome version MG20 v3.0
Description transcription factor C2H2 [Lotus japonicus] gi|193237571|dbj|BAG50062.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR14677
3 153 151 1.60E-66 –
PANTHER
PTHR14677:SF2
3 153 151 1.60E-66 –
SUPERFAMILY
SSF118310
9 59 51 2.01E-10 –
Gene3D
G3DSA:4.10.1110.10
12 59 48 7.60E-09
IPR000058
ProSiteProfiles
PS51039
13 59 47 7.503
IPR000058
Pfam
PF01428
16 53 38 1.30E-10
IPR000058
SMART
SM00154
16 55 40 0.033
IPR000058
Gene3D
G3DSA:4.10.1110.10
89 142 54 2.50E-08
IPR000058
ProSiteProfiles
PS51039
91 149 59 7.976
IPR000058
SUPERFAMILY
SSF118310
96 145 50 1.83E-09 –
SMART
SM00154
104 145 42 0.22
IPR000058
Pfam
PF01428
104 142 39 7.10E-09
IPR000058
MobiDBLite
mobidb-lite
174 195 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj2g3v1020060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1020060.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.