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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1068370 |
| Transcript ID | Lj2g3v1068370.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X2 [Cicer arietinum] gi|502090983|ref|XP_004489404.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 179 | 179 | – | – | |
| Gene3D | 5 | 100 | 96 | 8.50E-23 | ||
| SUPERFAMILY | 6 | 102 | 97 | 1.10E-18 | ||
| PANTHER | 12 | 183 | 172 | 6.20E-34 | – | |
| PANTHER | 12 | 183 | 172 | 6.20E-34 | – | |
| CDD | 15 | 95 | 81 | 5.18E-54 | – | |
| ProSiteProfiles | 17 | 95 | 79 | 11.452 | ||
| SMART | 18 | 91 | 74 | 4.40E-08 | ||
| Pfam | 22 | 70 | 49 | 1.50E-07 | ||
| Pfam | 107 | 178 | 72 | 2.30E-04 | – | |
| SMART | 111 | 183 | 73 | 2.2 | ||
| Gene3D | 123 | 178 | 56 | 2.20E-20 | ||
| SUPERFAMILY | 123 | 187 | 65 | 3.90E-09 | ||
| TMHMM | 180 | 202 | 23 | – | – | |
| Phobius | 180 | 204 | 25 | – | – | |
| Phobius | 205 | 246 | 42 | – | – | |
| Gene3D | 211 | 242 | 32 | 2.20E-20 | ||
| Phobius | 247 | 266 | 20 | – | – | |
| TMHMM | 262 | 284 | 23 | – | – | |
| Phobius | 267 | 270 | 4 | – | – | |
| Phobius | 271 | 287 | 17 | – | – | |
| Phobius | 288 | 306 | 19 | – | – | |
| Phobius | 307 | 326 | 20 | – | – | |
| Phobius | 327 | 336 | 10 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of Lj2g3v1068370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1068370.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.