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Lj2g3v1172540.1

Overview

Field	Value
Gene ID	Lj2g3v1172540
Transcript ID	Lj2g3v1172540.1
Lotus japonicus genome version	MG20 v3.0
Description	Protein CHUP1 [Medicago truncatula] gi\|357488243\|ref\|XP_003614409.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	28	55	28	–	–
PANTHER	PTHR31342 View details on PTHR31342 Search for proteins/transripts with this domain View external data on PTHR31342	28	34	7	4.00E-254	–
PANTHER	PTHR31342:SF7 View details on PTHR31342:SF7 Search for proteins/transripts with this domain View external data on PTHR31342:SF7	28	34	7	4.00E-254	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	82	102	21	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	92	237	146	–	–
PANTHER	PTHR31342:SF7 View details on PTHR31342:SF7 Search for proteins/transripts with this domain View external data on PTHR31342:SF7	157	517	361	4.00E-254	–
PANTHER	PTHR31342 View details on PTHR31342 Search for proteins/transripts with this domain View external data on PTHR31342	157	517	361	4.00E-254	–
SUPERFAMILY	SSF101447 View details on SSF101447 Search for proteins/transripts with this domain View external data on SSF101447	204	216	13	6.28E-05	–
SUPERFAMILY	SSF101447 View details on SSF101447 Search for proteins/transripts with this domain View external data on SSF101447	342	383	42	6.28E-05	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	498	524	27	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 42

Expression data

Expression pattern

Expression pattern of Lj2g3v1172540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1172540.1, powered by CORGI.

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