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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR31342
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.027s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0080909.1
n.a. Protein CHUP1 [Medicago truncatula] gi|357479207|ref|XP_003609889.1| chr0 31477693 31481830 +
1 domain prediction
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Lj0g3v0227749.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356548369|ref|XP_003542575.1| chr0 117703202 117704672 +
1 domain prediction
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Lj0g3v0281989.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356548369|ref|XP_003542575.1| chr0 146210388 146210854 +
1 domain prediction
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Lj0g3v0296969.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356548369|ref|XP_003542575.1| chr0 154275533 154276742 -
1 domain prediction
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Lj1g3v3881740.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356498962|ref|XP_003518314.1| chr1 44480297 44481540 +
1 domain prediction
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Lj1g3v4691730.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356570802|ref|XP_003553573.1| chr1 55643109 55645394 -
1 domain prediction
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Lj1g3v4691730.2
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356570802|ref|XP_003553573.1| chr1 55643109 55645394 -
1 domain prediction
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Lj2g3v1172540.1
n.a. Protein CHUP1 [Medicago truncatula] gi|357488243|ref|XP_003614409.1| chr2 18604700 18610365 -
1 domain prediction
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Lj3g3v0290300.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356556594|ref|XP_003546609.1| chr3 1941371 1944825 +
1 domain prediction
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Lj3g3v2318370.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like isoform X1 [Cicer arietinum] gi|502156130|ref|XP_004510323.1| chr3 28935173 28938305 +
1 domain prediction
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Lj4g3v0506830.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Cicer arietinum] gi|502142867|ref|XP_004505134.1| chr4 8459315 8463563 +
1 domain prediction
 –
Lj4g3v2226740.1
n.a. Protein CHUP1 [Medicago truncatula] gi|357479207|ref|XP_003609889.1| chr4 30864264 30871035 -
1 domain prediction
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Lj5g3v0402730.1
n.a. PREDICTED: protein CHUP1, chloroplastic-like [Glycine max] gi|356552350|ref|XP_003544531.1| chr5 3748052 3752985 -
1 domain prediction
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Lj5g3v1157340.1
n.a. Protein CHUP1 [Medicago truncatula] gi|357479207|ref|XP_003609889.1| chr5 18444435 18453152 +
1 domain prediction
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Lj5g3v1157340.2
n.a. Protein CHUP1 [Medicago truncatula] gi|357479207|ref|XP_003609889.1| chr5 18444435 18453152 +
1 domain prediction
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Lj6g3v1995880.1
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508780790|gb|EOY28046.1| chr6 23176017 23179819 -
1 domain prediction
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Lj6g3v1995880.2
n.a. Protein CHUP1 [Medicago truncatula] gi|357475663|ref|XP_003608117.1| chr6 23176622 23178544 -
1 domain prediction
 –
Lj6g3v2044670.1
n.a. Uncharacterized protein TCM_029927 [Theobroma cacao] gi|508781075|gb|EOY28331.1| chr6 24269971 24273558 -
1 domain prediction
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LotjaGi1g1v0117700.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G07120.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0S3RLT5|A0A0S3RLT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0117700 LjG1.1_chr1 18493971 18497045 -
2 domain predictions
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LotjaGi1g1v0682600.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7CZX2|V7CZX2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0682600 LjG1.1_chr1 125000317 125003271 +
2 domain predictions
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LotjaGi1g1v0682600.2
n.a. Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7CZX2|V7CZX2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0682600 LjG1.1_chr1 125000317 125003277 +
2 domain predictions
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LotjaGi2g1v0282100.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT3G25690.1 Hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0R0L8J5|A0A0R0L8J5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0282100 LjG1.1_chr2 75460667 75470527 -
2 domain predictions
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LotjaGi3g1v0022400.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|I1MCW3|I1MCW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0022400 LjG1.1_chr3 2431001 2434874 +
2 domain predictions
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LotjaGi3g1v0022400.2
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A151SHS5|A0A151SHS5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0022400 LjG1.1_chr3 2431001 2434874 +
2 domain predictions
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LotjaGi3g1v0022400.3
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|I1MCW3|I1MCW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0022400 LjG1.1_chr3 2431057 2434786 +
2 domain predictions
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LotjaGi3g1v0372700.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A151SH88|A0A151SH88_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0372700 LjG1.1_chr3 76328316 76335482 +
2 domain predictions
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LotjaGi3g1v0372700.2
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G52080.1 actin binding protein family; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A151SH88|A0A151SH88_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0372700 LjG1.1_chr3 76328734 76332067 +
2 domain predictions
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LotjaGi4g1v0052900.1
n.a. Hydroxyproline-rich glycoprotein; TAIR: AT1G61080.2 Hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980; TrEMBL-Plants: tr|K7L2N7|K7L2N7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0052900 LjG1.1_chr4 6388889 6393738 +
2 domain predictions
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LotjaGi4g1v0066100.1
n.a. Protein CHUP1, chloroplastic-like protein; TAIR: AT4G18570.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7C6B9|V7C6B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0066100 LjG1.1_chr4 8308760 8313031 +
2 domain predictions
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LotjaGi4g1v0315300.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7LZ72|K7LZ72_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0315300 LjG1.1_chr4 69213810 69225634 +
2 domain predictions
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LotjaGi4g1v0315300.2
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7LZ70|K7LZ70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0315300 LjG1.1_chr4 69213810 69225634 +
2 domain predictions
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LotjaGi4g1v0315300.3
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7LZ72|K7LZ72_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0315300 LjG1.1_chr4 69214048 69225661 +
2 domain predictions
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LotjaGi4g1v0315300.4
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7LZ70|K7LZ70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0315300 LjG1.1_chr4 69214138 69225493 +
2 domain predictions
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LotjaGi4g1v0315300.5
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7LZ72|K7LZ72_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0315300 LjG1.1_chr4 69214288 69225356 +
2 domain predictions
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LotjaGi5g1v0042300.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT3G25690.3 Hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7CS35|V7CS35_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0042300 LjG1.1_chr5 7069108 7074131 -
2 domain predictions
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LotjaGi5g1v0088800.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SUL5|A0A0B2SUL5_GLYSO Protein CHUP1, chloroplastic; Found in the gene: LotjaGi5g1v0088800 LjG1.1_chr5 15174644 15176827 -
2 domain predictions
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LotjaGi5g1v0088800.2
n.a. Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SUL5|A0A0B2SUL5_GLYSO Protein CHUP1, chloroplastic; Found in the gene: LotjaGi5g1v0088800 LjG1.1_chr5 15174782 15176749 -
2 domain predictions
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LotjaGi5g1v0185200_LC.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT4G18570.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|I1MER3|I1MER3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0185200_LC LjG1.1_chr5 47152098 47160139 -
2 domain predictions
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LotjaGi6g1v0217500.1
n.a. Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7MCA1|K7MCA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217500 LjG1.1_chr6 51966266 51970794 +
2 domain predictions
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LotjaGi6g1v0324500.1
n.a. Protein CHUP1, chloroplastic-like protein; TAIR: AT4G18570.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0L9VFK3|A0A0L9VFK3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0324500 LjG1.1_chr6 63994387 63998230 -
2 domain predictions
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LotjaGi6g1v0335500.1
n.a. hydroxyproline-rich glycoprotein family protein; TAIR: AT1G11070.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980; TrEMBL-Plants: tr|A0A1J7HLC9|A0A1J7HLC9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0335500 LjG1.1_chr6 64985955 64990369 -
2 domain predictions
 –