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Lj2g3v1196590.1

Overview

Field Value
Gene ID Lj2g3v1196590
Transcript ID Lj2g3v1196590.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description S-adenosylmethionine decarboxylase [Medicago falcata] gi|139478093|gb|ABO77440.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11570:SF4
1 354 354 2.30E-257 –
PANTHER
PTHR11570
1 354 354 2.30E-257
IPR001985
PIRSF
PIRSF001355
1 336 336 1.00E-107
IPR018167
Gene3D
G3DSA:3.60.90.10
4 334 331 9.90E-112
IPR016067
Pfam
PF01536
7 330 324 1.50E-109
IPR001985
TIGRFAM
TIGR00535
8 333 326 8.70E-133
IPR018167
SUPERFAMILY
SSF56276
11 332 322 1.57E-127
IPR016067
ProSitePatterns
PS01336
63 73 11 –
IPR018166

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004014
Molecular function Adenosylmethionine decarboxylase activity Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2).
Subterm of
GO:0006597
Biological process Spermine biosynthetic process The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging.
Subterm of
GO:0008295
Biological process Spermidine biosynthetic process The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj2g3v1196590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1196590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.