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Lj2g3v1200030.1

Overview

Field Value
Gene ID Lj2g3v1200030
Transcript ID Lj2g3v1200030.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor bHLH49-like [Glycine max] gi|356502674|ref|XP_003520142.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12565:SF121
70 161 92 5.60E-159 –
PANTHER
PTHR12565
70 161 92 5.60E-159 –
MobiDBLite
mobidb-lite
194 332 139 – –
PANTHER
PTHR12565:SF121
241 295 55 5.60E-159 –
PANTHER
PTHR12565
241 295 55 5.60E-159 –
PANTHER
PTHR12565:SF121
318 529 212 5.60E-159 –
PANTHER
PTHR12565
318 529 212 5.60E-159 –
CDD
cd00083
343 400 58 3.00E-11 –
SUPERFAMILY
SSF47459
343 414 72 6.80E-17
IPR011598
ProSiteProfiles
PS50888
345 395 51 15.485
IPR011598
Gene3D
G3DSA:4.10.280.10
346 412 67 1.30E-16
IPR011598
Pfam
PF00010
348 396 49 4.50E-06
IPR011598
SMART
SM00353
351 401 51 7.70E-10
IPR011598
MobiDBLite
mobidb-lite
514 533 20 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj2g3v1200030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1200030.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.