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Lj2g3v1225620.1

Overview

Field Value
Gene ID Lj2g3v1225620
Transcript ID Lj2g3v1225620.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description ACR4 [Medicago truncatula] gi|357487953|ref|XP_003614264.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31096
1 451 451 0 –
PANTHER
PTHR31096:SF13
1 451 451 0 –
SUPERFAMILY
SSF55021
39 107 69 1.41E-12 –
Gene3D
G3DSA:3.30.70.260
40 108 69 1.30E-06 –
CDD
cd04895
41 111 71 7.75E-36 –
Pfam
PF01842
42 102 61 2.00E-07
IPR002912
ProSiteProfiles
PS51671
43 122 80 11.595
IPR002912
Gene3D
G3DSA:3.30.70.260
128 193 66 2.30E-19 –
SUPERFAMILY
SSF55021
128 200 73 1.59E-14 –
CDD
cd04925
130 203 74 6.50E-35 –
ProSiteProfiles
PS51671
131 218 88 11.809
IPR002912
Pfam
PF01842
132 197 66 3.50E-08
IPR002912
CDD
cd04897
261 335 75 5.92E-41 –
ProSiteProfiles
PS51671
263 339 77 6.569
IPR002912
SUPERFAMILY
SSF55021
337 407 71 2.71E-10 –
Gene3D
G3DSA:3.30.70.260
337 408 72 2.30E-13 –
ProSiteProfiles
PS51671
341 417 77 12.367
IPR002912

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 38

Expression data

Expression pattern

Expression pattern of Lj2g3v1225620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1225620.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.