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Lj2g3v1252820.1

Overview

Field Value
Gene ID Lj2g3v1252820
Transcript ID Lj2g3v1252820.1
Lotus japonicus genome version MG20 v3.0
Description 14-3-3 protein SGF14f [Glycine max] gi|351726463|ref|NP_001238407.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18860
1 259 259 2.50E-213
IPR000308
PANTHER
PTHR18860:SF12
1 259 259 2.50E-213 –
PIRSF
PIRSF000868
1 248 248 8.60E-120
IPR000308
Gene3D
G3DSA:1.20.190.20
4 235 232 8.20E-120 –
SUPERFAMILY
SSF48445
6 237 232 2.09E-103
IPR023410
SMART
SM00101
7 249 243 3.20E-173
IPR023410
Pfam
PF00244
13 235 223 4.30E-105
IPR023410
Coils
Coil
13 33 21 – –
PRINTS
PR00305
39 68 30 9.40E-83
IPR000308
ProSitePatterns
PS00796
45 55 11 –
IPR023409
PRINTS
PR00305
88 112 25 9.40E-83
IPR000308
PRINTS
PR00305
119 141 23 9.40E-83
IPR000308
PRINTS
PR00305
154 180 27 9.40E-83
IPR000308
PRINTS
PR00305
181 207 27 9.40E-83
IPR000308
Coils
Coil
195 215 21 – –
PRINTS
PR00305
208 237 30 9.40E-83
IPR000308
ProSitePatterns
PS00797
217 236 20 –
IPR023409
MobiDBLite
mobidb-lite
237 259 23 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj2g3v1252820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1252820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.