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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1277260 |
| Transcript ID | Lj2g3v1277260.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable WRKY transcription factor 4 [Glycine max] gi|356497940|ref|XP_003517814.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | – | – | |
| PANTHER | 35 | 420 | 386 | 4.70E-207 | – | |
| PANTHER | 35 | 420 | 386 | 4.70E-207 | – | |
| MobiDBLite | 99 | 170 | 72 | – | – | |
| Gene3D | 154 | 227 | 74 | 2.40E-30 | ||
| SUPERFAMILY | 166 | 227 | 62 | 3.66E-26 | ||
| SMART | 168 | 226 | 59 | 4.70E-37 | ||
| ProSiteProfiles | 169 | 227 | 59 | 23.87 | ||
| Pfam | 169 | 225 | 57 | 1.50E-25 | ||
| MobiDBLite | 262 | 321 | 60 | – | – | |
| Gene3D | 322 | 397 | 76 | 2.10E-37 | ||
| SUPERFAMILY | 329 | 397 | 69 | 7.32E-30 | ||
| ProSiteProfiles | 332 | 397 | 66 | 38.836 | ||
| SMART | 337 | 396 | 60 | 1.30E-39 | ||
| Pfam | 338 | 395 | 58 | 2.80E-26 | ||
| MobiDBLite | 414 | 447 | 34 | – | – | |
| Coils | 439 | 447 | 9 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj2g3v1277260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1277260.1, powered by CORGI.
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