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Lj2g3v1293180.1

Overview

Field	Value
Gene ID	Lj2g3v1293180
Transcript ID	Lj2g3v1293180.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: transcription factor TCP14-like [Glycine max] gi\|356502529\|ref\|XP_003520071.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	36	83	48	–	–
PANTHER	PTHR31072:SF8 View details on PTHR31072:SF8 Search for proteins/transripts with this domain View external data on PTHR31072:SF8	57	158	102	3.20E-172	–
PANTHER	PTHR31072 View details on PTHR31072 Search for proteins/transripts with this domain View external data on PTHR31072	57	158	102	3.20E-172	–
Pfam	PF03634 View details on PF03634 Search for proteins/transripts with this domain View external data on PF03634	75	234	160	1.10E-37	IPR005333 Show description in modal box View details on IPR005333 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51369 View details on PS51369 Search for proteins/transripts with this domain View external data on PS51369	75	129	55	25.213	IPR017887 Show description in modal box View details on IPR017887 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31072 View details on PTHR31072 Search for proteins/transripts with this domain View external data on PTHR31072	183	429	247	3.20E-172	–
PANTHER	PTHR31072:SF8 View details on PTHR31072:SF8 Search for proteins/transripts with this domain View external data on PTHR31072:SF8	183	429	247	3.20E-172	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	242	272	31	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	392	430	39	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110

Genome browser

LORE1 insertions 1

30058827

Expression data

Expression pattern

Expression pattern of Lj2g3v1293180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1293180.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.