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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1378790 |
| Transcript ID | Lj2g3v1378790.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Auxin-induced protein 5NG4 [Medicago truncatula] gi|357485995|ref|XP_003613285.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | – | – | |
| PANTHER | 3 | 326 | 324 | 1.80E-184 | ||
| PANTHER | 3 | 326 | 324 | 1.80E-184 | – | |
| Pfam | 21 | 149 | 129 | 2.10E-06 | ||
| TMHMM | 37 | 59 | 23 | – | – | |
| Phobius | 37 | 59 | 23 | – | – | |
| SUPERFAMILY | 44 | 152 | 109 | 9.68E-06 | – | |
| Phobius | 60 | 70 | 11 | – | – | |
| Phobius | 71 | 93 | 23 | – | – | |
| Phobius | 94 | 98 | 5 | – | – | |
| TMHMM | 97 | 119 | 23 | – | – | |
| Phobius | 99 | 118 | 20 | – | – | |
| Phobius | 119 | 138 | 20 | – | – | |
| TMHMM | 135 | 157 | 23 | – | – | |
| Phobius | 139 | 157 | 19 | – | – | |
| Phobius | 158 | 176 | 19 | – | – | |
| TMHMM | 177 | 199 | 23 | – | – | |
| Phobius | 177 | 199 | 23 | – | – | |
| Pfam | 182 | 319 | 138 | 6.50E-09 | ||
| Phobius | 200 | 210 | 11 | – | – | |
| Phobius | 211 | 232 | 22 | – | – | |
| TMHMM | 211 | 232 | 22 | – | – | |
| Phobius | 233 | 246 | 14 | – | – | |
| SUPERFAMILY | 234 | 323 | 90 | 5.49E-09 | – | |
| TMHMM | 247 | 269 | 23 | – | – | |
| Phobius | 247 | 268 | 22 | – | – | |
| Phobius | 269 | 274 | 6 | – | – | |
| TMHMM | 274 | 296 | 23 | – | – | |
| Phobius | 275 | 295 | 21 | – | – | |
| Phobius | 296 | 300 | 5 | – | – | |
| TMHMM | 301 | 320 | 20 | – | – | |
| Phobius | 301 | 321 | 21 | – | – | |
| Phobius | 322 | 346 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj2g3v1378790.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1378790.3, powered by CORGI.
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