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Lj2g3v1451700.1

Overview

Field Value
Gene ID Lj2g3v1451700
Transcript ID Lj2g3v1451700.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Glycine max] gi|356497712|ref|XP_003517703.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
101 184 84 – –
ProSiteProfiles
PS50235
140 435 296 29.031
IPR028889
SUPERFAMILY
SSF54001
224 434 211 2.13E-52 –
PANTHER
PTHR24006:SF503
235 449 215 3.10E-115 –
PANTHER
PTHR24006
235 449 215 3.10E-115 –
Pfam
PF00443
253 432 180 3.00E-16
IPR001394
Gene3D
G3DSA:2.20.210.10
268 340 73 5.50E-10 –
MobiDBLite
mobidb-lite
459 496 38 – –
PANTHER
PTHR24006
547 566 20 3.10E-115 –
PANTHER
PTHR24006:SF503
547 566 20 3.10E-115 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0036459
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj2g3v1451700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1451700.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.