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Lj2g3v1550200.2

Overview

Field Value
Gene ID Lj2g3v1550200
Transcript ID Lj2g3v1550200.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: beta-amylase 8-like [Cicer arietinum] gi|502161971|ref|XP_004512346.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31352
1 651 651 0 –
MobiDBLite
mobidb-lite
1 69 69 – –
PANTHER
PTHR31352:SF8
1 651 651 0 –
Pfam
PF05687
52 200 149 8.60E-49
IPR008540
SUPERFAMILY
SSF51445
218 652 435 4.41E-158
IPR017853
Gene3D
G3DSA:3.20.20.80
221 651 431 2.20E-170
IPR013781
Pfam
PF01373
242 626 385 5.80E-85
IPR001554
PRINTS
PR00750
258 272 15 2.50E-56
IPR001554
PRINTS
PR00750
279 297 19 2.50E-56
IPR001554
PRINTS
PR00750
301 322 22 2.50E-56
IPR001554
PRINTS
PR00750
394 416 23 2.50E-56
IPR001554
PRINTS
PR00750
467 486 20 2.50E-56
IPR001554
PRINTS
PR00750
501 517 17 2.50E-56
IPR001554
PRINTS
PR00750
518 529 12 2.50E-56
IPR001554
PRINTS
PR00750
536 559 24 2.50E-56
IPR001554
PRINTS
PR00750
574 596 23 2.50E-56
IPR001554

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000272
Biological process Polysaccharide catabolic process The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
Subterm of
GO:0016161
Molecular function Beta-amylase activity Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj2g3v1550200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1550200.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.