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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001554
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.352s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0061799.1
n.a. PREDICTED: beta-amylase 3, chloroplastic-like [Glycine max] gi|356511157|ref|XP_003524296.1| chr0 20729002 20730929 +
3 domain predictions
2 GO terms
Lj0g3v0061809.1
n.a. n.a. chr0 20729002 20733444 -
3 domain predictions
2 GO terms
Lj0g3v0359449.1
n.a. PREDICTED: beta-amylase-like [Cicer arietinum] gi|502083126|ref|XP_004487367.1| chr0 189229135 189233569 -
3 domain predictions
2 GO terms
Lj1g3v2659300.1
n.a. PREDICTED: beta-amylase 7-like [Glycine max] gi|356568386|ref|XP_003552392.1| chr1 31006491 31014499 -
3 domain predictions
2 GO terms
Lj2g3v0632120.1
n.a. PREDICTED: beta-amylase 1, chloroplastic-like [Cicer arietinum] gi|502173079|ref|XP_004515248.1| chr2 9087560 9088278 -
2 domain predictions
2 GO terms
Lj2g3v0632130.1
n.a. PREDICTED: beta-amylase 1, chloroplastic-like [Cicer arietinum] gi|502173079|ref|XP_004515248.1| chr2 9088367 9092194 -
3 domain predictions
2 GO terms
Lj2g3v1550200.1
n.a. PREDICTED: beta-amylase 8-like [Cicer arietinum] gi|502161971|ref|XP_004512346.1| chr2 24596340 24601175 +
3 domain predictions
2 GO terms
Lj2g3v1550200.2
n.a. PREDICTED: beta-amylase 8-like [Cicer arietinum] gi|502161971|ref|XP_004512346.1| chr2 24596340 24601175 +
3 domain predictions
2 GO terms
Lj2g3v1988790.2
n.a. PREDICTED: LOW QUALITY PROTEIN: beta-amylase 3, chloroplastic-like, partial [Glycine max] gi|356495576|ref|XP_003516651.1| chr2 29588556 29590413 +
3 domain predictions
2 GO terms
Lj2g3v1988800.1
n.a. beta-amylase [Glycine max] gi|351726184|ref|NP_001236350.1| chr2 29590430 29591654 +
2 domain predictions
2 GO terms
Lj3g3v2888320.1
n.a. RecName: Full=Beta-amylase; AltName: Full=1,4-alpha-D-glucan maltohydrolasegi|2559006|gb|AAD04188.1| beta-amylase [Medicago sativa] gi|3913031|sp|O22585.1|AMYB_MEDSA chr3 35723257 35726099 +
3 domain predictions
2 GO terms
Lj4g3v3014460.1
n.a. PREDICTED: beta-amylase 1, chloroplastic-like [Glycine max] gi|356527702|ref|XP_003532447.1| chr4 40079918 40083053 -
3 domain predictions
2 GO terms
Lj6g3v1918250.1
n.a. PREDICTED: inactive beta-amylase 9-like [Glycine max] gi|356549058|ref|XP_003542915.1| chr6 21741831 21744845 -
3 domain predictions
2 GO terms
LotjaGi1g1v0475800.1
n.a. Beta-amylase; TAIR: AT2G45880.1 beta-amylase 7; Swiss-Prot: sp|O80831|BAM7_ARATH Beta-amylase 7; TrEMBL-Plants: tr|A0A0L9TBI9|A0A0L9TBI9_PHAAN Beta-amylase; Found in the gene: LotjaGi1g1v0475800 LjG1.1_chr1 98686083 98694403 -
4 domain predictions
2 GO terms
LotjaGi1g1v0475800.2
n.a. Beta-amylase; TAIR: AT2G45880.1 beta-amylase 7; Swiss-Prot: sp|O80831|BAM7_ARATH Beta-amylase 7; TrEMBL-Plants: tr|A0A0S3RSS5|A0A0S3RSS5_PHAAN Beta-amylase; Found in the gene: LotjaGi1g1v0475800 LjG1.1_chr1 98688339 98693746 -
4 domain predictions
2 GO terms
LotjaGi2g1v0184700.1
n.a. Beta-amylase; TAIR: AT3G23920.1 beta-amylase 1; Swiss-Prot: sp|Q9LIR6|BAM1_ARATH Beta-amylase 1, chloroplastic; TrEMBL-Plants: tr|K7MJ07|K7MJ07_SOYBN Beta-amylase; Found in the gene: LotjaGi2g1v0184700 LjG1.1_chr2 61002468 61007589 -
4 domain predictions
2 GO terms
LotjaGi2g1v0346600.1
n.a. Beta-amylase; TAIR: AT5G45300.3 beta-amylase 2; Swiss-Prot: sp|Q9FH80|BAM8_ARATH Beta-amylase 8; TrEMBL-Plants: tr|V7CIY1|V7CIY1_PHAVU Beta-amylase; Found in the gene: LotjaGi2g1v0346600 LjG1.1_chr2 82324263 82329272 +
4 domain predictions
2 GO terms
LotjaGi2g1v0346600.2
n.a. Beta-amylase; TAIR: AT5G45300.1 beta-amylase 2; Swiss-Prot: sp|Q9FH80|BAM8_ARATH Beta-amylase 8; TrEMBL-Plants: tr|V7CIY1|V7CIY1_PHAVU Beta-amylase; Found in the gene: LotjaGi2g1v0346600 LjG1.1_chr2 82324263 82329272 +
4 domain predictions
2 GO terms
LotjaGi2g1v0346600.3
n.a. Beta-amylase; TAIR: AT5G45300.1 beta-amylase 2; Swiss-Prot: sp|Q9FH80|BAM8_ARATH Beta-amylase 8; TrEMBL-Plants: tr|A0A0L9URV3|A0A0L9URV3_PHAAN Beta-amylase; Found in the gene: LotjaGi2g1v0346600 LjG1.1_chr2 82324353 82328718 +
4 domain predictions
2 GO terms
LotjaGi2g1v0417900.1
n.a. Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|A0A151TJ74|A0A151TJ74_CAJCA Beta-amylase; Found in the gene: LotjaGi2g1v0417900 LjG1.1_chr2 91635245 91638787 +
4 domain predictions
2 GO terms
LotjaGi2g1v0418000.1
n.a. Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|A0A0B2SBX7|A0A0B2SBX7_GLYSO Beta-amylase; Found in the gene: LotjaGi2g1v0418000 LjG1.1_chr2 91645820 91650688 +
4 domain predictions
2 GO terms
LotjaGi3g1v0192600.1
n.a. Beta-amylase; TAIR: AT2G32290.1 beta-amylase 6; Swiss-Prot: sp|O22585|AMYB_MEDSA Beta-amylase; TrEMBL-Plants: tr|G7IKM6|G7IKM6_MEDTR Beta-amylase; Found in the gene: LotjaGi3g1v0192600 LjG1.1_chr3 27809971 27814503 +
4 domain predictions
2 GO terms
LotjaGi3g1v0462300.1
n.a. Beta-amylase; TAIR: AT4G15210.1 beta-amylase 5; Swiss-Prot: sp|O22585|AMYB_MEDSA Beta-amylase; TrEMBL-Plants: tr|I1LRU3|I1LRU3_SOYBN Beta-amylase; Found in the gene: LotjaGi3g1v0462300 LjG1.1_chr3 87735616 87741252 +
4 domain predictions
2 GO terms
LotjaGi4g1v0192900.1
n.a. Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|I1K0Y6|I1K0Y6_SOYBN Beta-amylase; Found in the gene: LotjaGi4g1v0192900 LjG1.1_chr4 44419710 44426930 +
4 domain predictions
2 GO terms
LotjaGi4g1v0437700.1
n.a. Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|K7L4L5|K7L4L5_SOYBN Beta-amylase; Found in the gene: LotjaGi4g1v0437700 LjG1.1_chr4 81090963 81094385 -
4 domain predictions
2 GO terms
LotjaGi6g1v0305800_LC.1
n.a. Beta-amylase; TAIR: AT5G18670.1 beta-amylase 3; Swiss-Prot: sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9; TrEMBL-Plants: tr|G7ISJ8|G7ISJ8_MEDTR Beta-amylase; Found in the gene: LotjaGi6g1v0305800_LC LjG1.1_chr6 62299281 62310225 -
4 domain predictions
2 GO terms
LotjaGi6g1v0305800_LC.2
n.a. Beta-amylase; TAIR: AT5G18670.1 beta-amylase 3; Swiss-Prot: sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9; TrEMBL-Plants: tr|G7ISJ8|G7ISJ8_MEDTR Beta-amylase; Found in the gene: LotjaGi6g1v0305800_LC LjG1.1_chr6 62299281 62310225 -
4 domain predictions
2 GO terms
LotjaGi6g1v0305800_LC.3
n.a. Beta-amylase; TAIR: AT5G18670.1 beta-amylase 3; Swiss-Prot: sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9; TrEMBL-Plants: tr|G7ISJ8|G7ISJ8_MEDTR Beta-amylase; Found in the gene: LotjaGi6g1v0305800_LC LjG1.1_chr6 62299281 62310225 -
4 domain predictions
2 GO terms
LotjaGi6g1v0305800_LC.4
n.a. Beta-amylase; TAIR: AT5G18670.1 beta-amylase 3; Swiss-Prot: sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9; TrEMBL-Plants: tr|G7ISJ8|G7ISJ8_MEDTR Beta-amylase; Found in the gene: LotjaGi6g1v0305800_LC LjG1.1_chr6 62299317 62310160 -
4 domain predictions
2 GO terms
LotjaGi6g1v0306000.1
n.a. Beta-amylase; TAIR: AT5G18670.1 beta-amylase 3; Swiss-Prot: sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9; TrEMBL-Plants: tr|A0A151T733|A0A151T733_CAJCA Beta-amylase; Found in the gene: LotjaGi6g1v0306000 LjG1.1_chr6 62325695 62328889 -
4 domain predictions
2 GO terms