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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1560880 |
| Transcript ID | Lj2g3v1560880.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: WAT1-related protein At4g19185-like isoform X1 [Cicer arietinum] gi|502161864|ref|XP_004512310.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| PANTHER | 5 | 316 | 312 | 2.00E-155 | ||
| PANTHER | 5 | 316 | 312 | 2.00E-155 | – | |
| TMHMM | 20 | 37 | 18 | – | – | |
| Phobius | 21 | 41 | 21 | – | – | |
| Pfam | 23 | 122 | 100 | 1.70E-07 | ||
| Phobius | 42 | 46 | 5 | – | – | |
| Phobius | 47 | 68 | 22 | – | – | |
| TMHMM | 50 | 67 | 18 | – | – | |
| Phobius | 69 | 79 | 11 | – | – | |
| Phobius | 80 | 98 | 19 | – | – | |
| TMHMM | 82 | 99 | 18 | – | – | |
| Phobius | 99 | 103 | 5 | – | – | |
| TMHMM | 104 | 123 | 20 | – | – | |
| Phobius | 104 | 123 | 20 | – | – | |
| Phobius | 124 | 167 | 44 | – | – | |
| Pfam | 168 | 305 | 138 | 8.80E-15 | ||
| Phobius | 168 | 188 | 21 | – | – | |
| TMHMM | 169 | 191 | 23 | – | – | |
| Phobius | 189 | 199 | 11 | – | – | |
| TMHMM | 198 | 220 | 23 | – | – | |
| Phobius | 200 | 220 | 21 | – | – | |
| SUPERFAMILY | 205 | 310 | 106 | 1.28E-10 | – | |
| Phobius | 221 | 231 | 11 | – | – | |
| Phobius | 232 | 251 | 20 | – | – | |
| TMHMM | 233 | 250 | 18 | – | – | |
| Phobius | 252 | 256 | 5 | – | – | |
| TMHMM | 257 | 276 | 20 | – | – | |
| Phobius | 257 | 274 | 18 | – | – | |
| Phobius | 275 | 285 | 11 | – | – | |
| Phobius | 286 | 309 | 24 | – | – | |
| TMHMM | 286 | 308 | 23 | – | – | |
| Phobius | 310 | 316 | 7 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of Lj2g3v1560880.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1560880.2, powered by CORGI.
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