Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1647860.1

Overview

Field Value
Gene ID Lj2g3v1647860
Transcript ID Lj2g3v1647860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ankyrin repeat domain-containing protein, chloroplastic-like [Cicer arietinum] gi|502161503|ref|XP_004512186.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24198:SF87
101 153 53 9.30E-85 –
PANTHER
PTHR24198
101 153 53 9.30E-85 –
PANTHER
PTHR24198:SF87
178 440 263 9.30E-85 –
PANTHER
PTHR24198
178 440 263 9.30E-85 –
MobiDBLite
mobidb-lite
183 205 23 – –
SUPERFAMILY
SSF48403
255 414 160 8.64E-40
IPR020683
Gene3D
G3DSA:1.25.40.20
256 415 160 8.70E-43
IPR020683
SMART
SM00248
269 298 30 48
IPR002110
ProSiteProfiles
PS50297
273 425 153 40.346
IPR020683
Pfam
PF13637
273 315 43 4.60E-07 –
CDD
cd00204
297 425 129 1.14E-35 –
SMART
SM00248
302 331 30 0.2
IPR002110
ProSiteProfiles
PS50088
302 334 33 9.511
IPR002110
Pfam
PF12796
318 399 82 2.90E-12
IPR020683
ProSiteProfiles
PS50088
335 367 33 10.873
IPR002110
SMART
SM00248
335 364 30 0.046
IPR002110
SMART
SM00248
368 397 30 1.20E-04
IPR002110
ProSiteProfiles
PS50088
368 400 33 13.33
IPR002110
SMART
SM00248
401 430 30 2300
IPR002110

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj2g3v1647860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1647860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.